Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06291 ATGGTTCTATCAAACAAGAAGCTTAAACAGAAGCTTAAAGCTGAATTAACCCTAAACCAAATCAACGCTGAATCTAATCCTTCTTCTTCATCTTCCAACTCTCTTAAAAATCTTCTTCACTCTTCCACCAACAAACCCATTTTGTCTAAGAGAGAGAAACTTAGAAAGATTCGACCTTTACAACAAACTCAATCACCCAATGAAGACGAAGGAACAAAAAACAGCAATGAGATTGGGACTGAGGGTTTGGAAAAGAAGAACGATAAAAAGAGAAAAAGGAAATTGGTAGAGAAACAAAATGATGGTGATGTTGTGGCTAACGAGGTTGTTGTTAAGGATACTAGCAAATCAGTGAAAGAGAATGATGCTGATGTTGTGGCTAATGTGGTTGTCGTTAACTCTTCCACCAACAAATCCATTTTGCCTAAGAAGAGAGTAAAACCTCGATGGATTCGACTCGATGAATACTTAGAAATGAAAAACAACAATGAAATTGGGACTGAGGGTTTGGAAAAGATGAAGATTAGAAAGATAAAAAGGAAAGTGGTAGAAGAACATAATGATGGTGATGTTGTGGCTAATGAGGTTGCTGTTGTTAAGGATACTGTTGAGGTTATCAGCAAATCAATGAAAAAGAAGGAGAATCAAAAGAAGAAGAATCTGCAGAAGAAGATGAGAAAGAAGAACAAAGCTGCAGAGGAAAATGCCAATACTGTAGAGGCAAGTTCCAAAGTTGCAGAGGAAAATGGTTCCAATCAGCAAGAGGAATTGCCACAATCTAATGGAGTGACTAACACGAATATCACTACCAGTCAAGAAAATGGTGATGCTTCTACAAAAGTTTATGTTGGAGGAATACCCTTCTATTCAAGTGAGGATGACATTCGAAGTTATTTTGAAGGCTGTGGCACCATCACTGAAATTAATTGCATGACTTTTCCTGACACCGGCAAGTTTAGAGGGATTGCGATTATTAGTTATAAGACTGAAGCAGCAGCCAAACGAGCATTGGCTCTTGATGGAGCTGACATGGGAGGACTTTTTCTTAAAATTCAACCTTATAAAGCAACTCAAGCAACCCGATTTACTCCAGAAATGAAGGAGGGATATAATAGAGTATATGTTGGAAGTTTGTCATGGGAAATAACAGAGGAAGAGCTGAAGAAATTCTTCTCAAATTGCAATATAAAGTCCATACGATTAGGTATGGACAAGGAAACGGGAGAATTCCGAGGATATGCTCATGTAGATTTCAGTGATAGTAAGTCACTAAAGACAGCACTTGCATTGGACCAAAGTGTGTTGTTTGGAAGACCTGTCAGAATAAGTTGTGCAGTTCCTTTGAAGAAAAAATCAGATGCAGGTGAAAAACCAGTTGCGGGTTCTAAACCAGGTGTGGGTGAAAAATCAATTGCAGGTTCTAAACCAGGTGCCGGTGAAAAATCAGTCGCAGGTTATGAACCAGGATCAGGTGAAAAATCAGTTGCAAGTTCTAAACCAGTTTCAGGTGAAAAATCAGTAGCAGGTTCTAAACCAGGTGCAGGTGAAAAATCAGCTGCAGACGAGAAACCAGATGCTGAAGAAAGAGAAACTGTTGAGAAACCACCAAGTTCCGTTGTAAGTGGTGGCAAGAGGAAGAATAGGATGTGCTATGGTTGTCGTCAAAAAGGACATAATCTCTCAGAATGCCCAAACCAACAAACAGTTGCCTCTACTACAATCTAA 1725 0.3907 MVLSNKKLKQKLKAELTLNQINAESNPSSSSSNSLKNLLHSSTNKPILSKREKLRKIRPLQQTQSPNEDEGTKNSNEIGTEGLEKKNDKKRKRKLVEKQNDGDVVANEVVVKDTSKSVKENDADVVANVVVVNSSTNKSILPKKRVKPRWIRLDEYLEMKNNNEIGTEGLEKMKIRKIKRKVVEEHNDGDVVANEVAVVKDTVEVISKSMKKKENQKKKNLQKKMRKKNKAAEENANTVEASSKVAEENGSNQQEELPQSNGVTNTNITTSQENGDASTKVYVGGIPFYSSEDDIRSYFEGCGTITEINCMTFPDTGKFRGIAIISYKTEAAAKRALALDGADMGGLFLKIQPYKATQATRFTPEMKEGYNRVYVGSLSWEITEEELKKFFSNCNIKSIRLGMDKETGEFRGYAHVDFSDSKSLKTALALDQSVLFGRPVRISCAVPLKKKSDAGEKPVAGSKPGVGEKSIAGSKPGAGEKSVAGYEPGSGEKSVASSKPVSGEKSVAGSKPGAGEKSAADEKPDAEERETVEKPPSSVVSGGKRKNRMCYGCRQKGHNLSECPNQQTVASTTI 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06291 574 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 113 355 - -
Trre1g06291 574 ProSiteProfiles Zinc finger CCHC-type profile. 550 565 IPR001878 GO:0003676|GO:0008270
Trre1g06291 574 Gene3D - 361 455 IPR012677 -
Trre1g06291 574 MobiDBLite consensus disorder prediction 19 98 - -
Trre1g06291 574 SUPERFAMILY RNA-binding domain, RBD 363 465 IPR035979 GO:0003676
Trre1g06291 574 SUPERFAMILY Retrovirus zinc finger-like domains 541 568 IPR036875 GO:0003676|GO:0008270
Trre1g06291 574 SUPERFAMILY RNA-binding domain, RBD 252 361 IPR035979 GO:0003676
Trre1g06291 574 MobiDBLite consensus disorder prediction 555 574 - -
Trre1g06291 574 Coils Coil 210 249 - -
Trre1g06291 574 MobiDBLite consensus disorder prediction 453 548 - -
Trre1g06291 574 MobiDBLite consensus disorder prediction 235 275 - -
Trre1g06291 574 MobiDBLite consensus disorder prediction 59 78 - -
Trre1g06291 574 MobiDBLite consensus disorder prediction 212 226 - -
Trre1g06291 574 MobiDBLite consensus disorder prediction 79 98 - -
Trre1g06291 574 MobiDBLite consensus disorder prediction 19 45 - -
Trre1g06291 574 CDD RRM1_PHIP1 281 352 IPR034361 -
Trre1g06291 574 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 347 IPR000504 GO:0003723
Trre1g06291 574 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 373 440 IPR000504 GO:0003723
Trre1g06291 574 SMART rrm1_1 372 443 IPR000504 GO:0003723
Trre1g06291 574 SMART rrm1_1 280 352 IPR000504 GO:0003723
Trre1g06291 574 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 371 447 IPR000504 GO:0003723
Trre1g06291 574 MobiDBLite consensus disorder prediction 516 534 - -
Trre1g06291 574 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 356 IPR000504 GO:0003723
Trre1g06291 574 MobiDBLite consensus disorder prediction 210 275 - -
Trre1g06291 574 Gene3D - 199 360 IPR012677 -
Trre1g06291 574 MobiDBLite consensus disorder prediction 559 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06291 Trre-Chr1 66370737 66373831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06291 279 453 Eukaryotic Initiation Factors Gene Family AT2G36660 27.368 4.08e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06291 - - tpra:123897273 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06291 1 66370737 66373831 Trre1g06291 1 66370737 66373831 ECH