Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06288 ATGTTGAAGAGAGAAAGAGAAAGTGATCTTAATATTAATAGCATAACCATGGCTAAATACTTGATGTTACTTTCTGGTGGAGAATTTGATCAAGTGAATTACTCCTCAAATTTCAACAACCGTGTTTTCGAGTGCAAGACATGTAAAAGACAATTCTCGTCGTTTCAAGCGTTAGGCGGACATCGAGCGAGTCACAAGAAACCGCGGTTGATGGAGATGACGAGCGATGGTGATGACCATGCACTTGCAACAAAAACAAAGGCTAAAACACATGAATGTTCAATTTGTGGATTGGAATTTGCAATTGGACAAGCTTTGGGTGGTCACATGAGAAGACATAGAAAAACAGCATCAAAAGTTTCTAATAATTCAAATGGAAACATGCACAATTTTATGATTACAACTACTACTAGTAGTAGCAATAGTGGTGGTAGTACTATTGATAATAGTACTAATACTAATTCAGCAAAGAGGAACAAGGGGAACACCAATAATAGATTTTTGTTTCTGGATTTGAATTTGACACCTTTAGAGAATGATTTGAAGTTTTTGAAGATTGGACAATCAACTCCTAATTTGGTGGATTGTTTCAATTGA 597 0.3585 MLKRERESDLNINSITMAKYLMLLSGGEFDQVNYSSNFNNRVFECKTCKRQFSSFQALGGHRASHKKPRLMEMTSDGDDHALATKTKAKTHECSICGLEFAIGQALGGHMRRHRKTASKVSNNSNGNMHNFMITTTTSSSNSGGSTIDNSTNTNSAKRNKGNTNNRFLFLDLNLTPLENDLKFLKIGQSTPNLVDCFN 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06288 198 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Trre1g06288 198 Gene3D Classic Zinc Finger 41 113 - -
Trre1g06288 198 PANTHER ZINC FINGER PROTEIN ZAT5 35 180 - -
Trre1g06288 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Trre1g06288 198 MobiDBLite consensus disorder prediction 136 162 - -
Trre1g06288 198 Pfam C2H2-type zinc finger 42 68 - -
Trre1g06288 198 Pfam C2H2-type zinc finger 91 115 - -
Trre1g06288 198 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Trre1g06288 198 SMART c2h2final6 91 113 IPR013087 -
Trre1g06288 198 SMART c2h2final6 43 65 IPR013087 -
Trre1g06288 198 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Trre1g06288 198 SUPERFAMILY beta-beta-alpha zinc fingers 41 113 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06288 Trre-Chr1 66347087 66347683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06288 5 196 C2H2 Transcription Factor Family AT2G28200 37.719 5.10e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g06288 zf-C2H2_6 7.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06288 - - psat:127098085 276.174