Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06280 ATGGTGAACATGATGGAGTGGCAGAAACAACAAGTTCAGAATGGTAATGTCGACGCCATGTATGTCAAGGTTATGACTGATGAACAATTGGAAACTCTCAGGAAACAAATTGCTATTTATGCTACCATTTGTGAACAACTTGTTCAGATGCACAAAACACTTTCTGCTCAACAAGATCTTGCTGGAGTTAGGCTGGGAAATTTATACTGCGACTCATTGCTGACATCTGGTCACAAAATCACATCCAGACAGAGGTGGACTCCTACACCAGTTCAGCTCCAGATTCTCGAACGCATATTCGATCAGGGAAATGGAACTCCGAGCAAAGAAAAAATCAAGGAGATTGCTACGGAACTAGGCCAGCATGGCCAAATATCTGAAACAAATGTTTATAATTGGTTCCAAAATAGGCGTGCTAGATCGAAAAGAAAAATGCAAAATGGGGGAACTAGTAACACTGAATCAGAGGTAGAGACTGAAGTCGATTCCAAAGACAAGAAGACAAAACCAGAGGAGTTTATGTCCCAACAAAATGTTGCTGCAGGGGATGAAAATTTGTGCTTCCAGAACCCTGAAAAATGCTCTGAAATGCAGTACTTGAATCCAGATTCTAACAAAGCATATTCCATTTTTCCATCGGATGGCGATGTAAGATCAACAAGAAATTTGAGTGGTGCGTCTCTTTATGATGAAGTGCTGTCAAACTCAAGGAATGACTATCTAGCTGGAAAAATGGAAGTACCAGGGAGTTACAATTTATACCAGCAAGCAGATGACTATAATTTGACAGGTTGA 795 0.405 MVNMMEWQKQQVQNGNVDAMYVKVMTDEQLETLRKQIAIYATICEQLVQMHKTLSAQQDLAGVRLGNLYCDSLLTSGHKITSRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEIATELGQHGQISETNVYNWFQNRRARSKRKMQNGGTSNTESEVETEVDSKDKKTKPEEFMSQQNVAAGDENLCFQNPEKCSEMQYLNPDSNKAYSIFPSDGDVRSTRNLSGASLYDEVLSNSRNDYLAGKMEVPGSYNLYQQADDYNLTG 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06280 264 SUPERFAMILY Homeodomain-like 82 146 IPR009057 -
Trre1g06280 264 SMART HOX_1 81 148 IPR001356 GO:0003677
Trre1g06280 264 Pfam Homeodomain 83 143 IPR001356 GO:0003677
Trre1g06280 264 Gene3D - 85 149 - -
Trre1g06280 264 MobiDBLite consensus disorder prediction 141 170 - -
Trre1g06280 264 CDD homeodomain 83 145 IPR001356 GO:0003677
Trre1g06280 264 PANTHER WUSCHEL-RELATED HOMEOBOX 13 6 261 IPR044559 GO:0003700
Trre1g06280 264 ProSiteProfiles 'Homeobox' domain profile. 79 144 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06280 Trre-Chr1 66277344 66280028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06280 4 264 Wox Gene Family AT4G35550 49.664 1.48e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre1g06280 Homeodomain 2.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06280 - - pvu:PHAVU_007G011600g 382.874