Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06271 ATGTTTGGCTTAACTCTCATATTTTTATTCTCTAGTGAACACAAATGTGCAGCCAAAGAGATGGAATTTTTGGAAATTCCATCTCTACCGGTTGCGCGGTTCAAGGATTTGGACGAAGATGAAGATCGGGATGAGATTTGTTCCATTTGCTTGGTTGAGTTTGAGGGAGAAGATGCAGTGAGCAAGTTGAGGAGATGTGAGCATGTGTTTCATTTCAATTGCATTGAGCAATGGTTAGAACGAAATCAATTTTCTTGTCCACTTTGTAGGTCTTTATTATTTTCTTAA 288 0.3819 MFGLTLIFLFSSEHKCAAKEMEFLEIPSLPVARFKDLDEDEDRDEICSICLVEFEGEDAVSKLRRCEHVFHFNCIEQWLERNQFSCPLCRSLLFS 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06271 95 SMART ring_2 47 89 IPR001841 -
Trre1g06271 95 ProSiteProfiles Zinc finger RING-type profile. 47 90 IPR001841 -
Trre1g06271 95 PANTHER RING ZINC FINGER PROTEIN-RELATED 28 91 - -
Trre1g06271 95 Pfam Ring finger domain 46 90 IPR001841 -
Trre1g06271 95 SUPERFAMILY RING/U-box 26 93 - -
Trre1g06271 95 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 93 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06271 Trre-Chr1 66213645 66213932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06271 38 95 C3H Transcription Factor Family AT4G38140 55.172 4.53e-20 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06271 - - pvu:PHAVU_007G012000g 118.627