Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06268 ATGGAAGAGATGTTGGGTTCAGCTTCAACAACAACAACAATCAATTCTTCCAATATAGGGTTTCAGCTATTGAAGAAGCATGGTTGGAAAGAAGGGACTGGTCTTGGGATCTCTGAGCAGGGTAGATTAGAACCGGTGGAAACACGTATGAAGAATAATAAACGAGGTATAGGAGCAGATATAGTGAAGAAAAAGGTTGTCAAGCCGGACCGTGGCGATTCCTCCAAAGCAGACAATAAGCAGGAACATTTGTCTCAAAAGAAAACCAAAGCACTTTCTAAACGGATGAGAAAGATGCAGGAGCTTGAAAAGAAGATGCAAGAGAAGGAATTTGATCGTGCTTTCTATAGAGAGTTTTGGCCTGAAAATGTGTGA 375 0.4133 MEEMLGSASTTTTINSSNIGFQLLKKHGWKEGTGLGISEQGRLEPVETRMKNNKRGIGADIVKKKVVKPDRGDSSKADNKQEHLSQKKTKALSKRMRKMQELEKKMQEKEFDRAFYREFWPENV 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06268 124 PANTHER BAT4 PROTEIN-RELATED 7 124 IPR039146 -
Trre1g06268 124 ProSiteProfiles G-patch domain profile. 16 62 IPR000467 GO:0003676
Trre1g06268 124 Coils Coil 89 112 - -
Trre1g06268 124 MobiDBLite consensus disorder prediction 32 101 - -
Trre1g06268 124 Pfam G-patch domain 17 59 IPR000467 GO:0003676
Trre1g06268 124 SMART G-patch_5 14 60 IPR000467 GO:0003676
Trre1g06268 124 MobiDBLite consensus disorder prediction 44 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06268 Trre-Chr1 66201246 66203759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06268 3 58 C2H2 Transcription Factor Family AT5G26610 46.429 4.23e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06268 - - cam:101497292 206.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06268 1 66201246 66203759 Trre1g06268 1 66201246 66203759 ECH