Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06262 ATGGCAACAAAGGGAGCGAAAAGGGTTGATGCCGTCGATTCTCGTGCTGGTTCCGTTCTTGTTCGTGCCAGAGATGGCAGTGCTTTCGCTAAATGTGATGAGTGCAAGAAAGATGTTCCTGTAGCACTCATTAGTATGCACGATTGTAGCCTTGAAGCCAAAATCAAAATGAATCTCGATGCTCAAGTTATTGAGCAAGCTGCTGAAGCAAAGAAACCTGAGAGAAAGAAGCCTAAATCGAAAGAACCAAGTGCTAAAAGGGCTAAGGTTGGGAAAGTGAAGAAGGTTAAGGATCCTAACATGCCCAAGCGTCCTCCTACTGCTTTCTTTGTTTTCATGGATGATTTTAGAAAAACATTTAAGGAAGCTAATCCTGATTCAAAGGATGTTAAAAGAGTTGGTAAAGAGGCTGGTGAGAAGTGGAGGTCTTTGACTGATGAAGAGAAGAAGCCTTATTTGGATAGAGTTATTGAACTGAAAGCAGAATATGAGAAGGCTATGGAAATTTATAATGCTACTGAAAAGGAAGATCAAGAAGAGGGTTCTGATAAGTCTGATAAGGAAGCCCCTGCAACAGTAGAGGTGGAAGAGTTAACAGATGAGGAGTAG 609 0.4171 MATKGAKRVDAVDSRAGSVLVRARDGSAFAKCDECKKDVPVALISMHDCSLEAKIKMNLDAQVIEQAAEAKKPERKKPKSKEPSAKRAKVGKVKKVKDPNMPKRPPTAFFVFMDDFRKTFKEANPDSKDVKRVGKEAGEKWRSLTDEEKKPYLDRVIELKAEYEKAMEIYNATEKEDQEEGSDKSDKEAPATVEVEELTDEE 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06262 202 CDD HMG-box_AtHMGB1-like 103 163 - -
Trre1g06262 202 MobiDBLite consensus disorder prediction 67 104 - -
Trre1g06262 202 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 7 192 - -
Trre1g06262 202 MobiDBLite consensus disorder prediction 170 202 - -
Trre1g06262 202 MobiDBLite consensus disorder prediction 67 101 - -
Trre1g06262 202 SUPERFAMILY HMG-box 88 170 IPR036910 -
Trre1g06262 202 Gene3D High mobility group box domain 86 187 IPR036910 -
Trre1g06262 202 MobiDBLite consensus disorder prediction 170 194 - -
Trre1g06262 202 Pfam HMG (high mobility group) box 102 171 IPR009071 -
Trre1g06262 202 Coils Coil 156 180 - -
Trre1g06262 202 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 171 IPR009071 -
Trre1g06262 202 SMART hmgende2 101 172 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06262 Trre-Chr1 66147633 66148938 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre1g06262 HMG_box 4.9e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06262 K25507 - gmx:100306558 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06262 1 66147633 66148938 Trre1g06262 1 66147633 66148938 ECH