Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06233 ATGTCTAACGCCGACGGAACAACAACCACAACCACCACTAACGGCTCAATCATTGACCAAAACCGTCAACAGTTAGCCGTTAAAAAACCTCCCTCCAAAGATCGTCACAGTAAAGTTGACGGCCGTGGACGCCGTATTCGTATGCCAATCATATGCGCAGCTCGCGTTTTCCAGCTCACTCGCGAATTAGGTCATAAATCCGACGGTCAAACTATCGAATGGCTTCTCCGTCAAGCTGAACCTTCAATCATCGCCGCCACCGGTACCGGAACTACTCCGGCCAGTTTCTCATCTCTCTCTGTTTCTCTCCGCGGCTCTAACAATTCACTTCCGTCACCTTCTTCAACTTCGCTAGAGCATAAGCCTCTCCTCTCTCCGACACCGTTCATTCTCGGTAAACGTATTCGCACCGACGATGATTCTTCATCTTCTTCCGCTAACGCTAAAGAGGATGCTCTCTCTGTTGCTTCTCTTTCAACACCGGCGGCGCTTTGGACGTTACCTTCACGGCCTGATTTTGGACAAATTTGGAGTTTCGCTGCCGCCGCTGCTGGCGCTCCTCAGCCGGAAATGGTGATTCAGTCTTTGTCTCAACAGCAGCAACAACATCAAGCTTCTTTCTTCGCTCATCATCATCACCAGCAGCAGCAGCAGCAACAAGCTATGGGTGAAGCTTCAGCTGCTAGAGTTGGGAATTATCTTCCTAGTCATCTGAATTTGCTTGCTTCGTTTGGTGGTGATGGTGATGTTCAAATTTGTTTTAGATTATGGGGTTTTGCAGAAGGAGAGAAAAGTATGATATTTATTTATGCGATAGTGGTGGTGGTCATAAATTGGATTGAGGCTGGAATAGGTTTTCAGAACCTTGATCATTGTGCAGTGGAATTTACTTTTGATTGTCGATTGAAGAAGAAGAAGAAGTAA 924 0.4686 MSNADGTTTTTTTNGSIIDQNRQQLAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSVSLRGSNNSLPSPSSTSLEHKPLLSPTPFILGKRIRTDDDSSSSSANAKEDALSVASLSTPAALWTLPSRPDFGQIWSFAAAAAGAPQPEMVIQSLSQQQQQHQASFFAHHHHQQQQQQQAMGEASAARVGNYLPSHLNLLASFGGDGDVQICFRLWGFAEGEKSMIFIYAIVVVVINWIEAGIGFQNLDHCAVEFTFDCRLKKKKK 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06233 307 MobiDBLite consensus disorder prediction 204 224 - -
Trre1g06233 307 ProSiteProfiles TCP domain profile. 32 86 IPR017887 -
Trre1g06233 307 MobiDBLite consensus disorder prediction 101 122 - -
Trre1g06233 307 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 22 233 IPR005333 GO:0003700
Trre1g06233 307 MobiDBLite consensus disorder prediction 1 27 - -
Trre1g06233 307 Pfam TCP family transcription factor 32 196 IPR017887 -
Trre1g06233 307 MobiDBLite consensus disorder prediction 1 44 - -
Trre1g06233 307 MobiDBLite consensus disorder prediction 28 44 - -
Trre1g06233 307 MobiDBLite consensus disorder prediction 101 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06233 Trre-Chr1 65944788 65946094 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06233 12 246 TCP Transcription Factor Family AT5G23280 65.145 4.23e-91 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre1g06233 TCP 4.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06233 K16221 - gmx:100799005 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06233 1 65944788 65946094 Trre1g06233 1 65944788 65946094 ECH