Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06231 ATGTCTTCTGGCGGCGATAGCGGCGGCGGCGCTGTTGGTAAGCTTTTCTTCTGCCACGTTTGCAGTCGGAGAGTTACCTGCTCCGATGATTCCGAACCTTTTTGTCCAATCTGCTTCCAAGGTTTCCTCGAAGAATGTAATCAAATTCCCGAACCTAACCCTAACCCTAGTTTTCACTTCAGCTTCAGCAACGACGATTCCTCCGACACGGATTCCGATTTCCCATTCCATCCATTCGCTCTTCTCCCTCTGTTGCTATCCTCTGCTTCAATTTCCAGAACCCGCCCCGAATCAGAGAGTTTCGACCCGTTCACTTTCCTTCAGAATCACCTTCATGGCCTTCACGCCGACGGTGCTAACATTCAATTCGAAATCAATCATCCTTCTGAATCTGAACCAGGTTTTCGCGTTCCCTCTAATTTTGGTGATTACTTTCTCGGTCCTGGCCTTGAACAATTGATTCAGCAACTCGCCGAGAATGATCCTAACCGTTATGGAACACCACCGGCATCGAAAAACGCGGTTAAGAATCTTCCAACAGTAACTGTTGATGATGAATTGTTGAACTCGGAATTGAACCAGTGTGCTGTTTGTCAGGATGAGTTTGAGAAGGGTTCACAGGTGAGGCAAATGCCTTGCAAGCATGTGTATCATGATGATTGCTTGCTTCCATGGCTTGAATTGCATAATTCTTGTCCTGTTTGTCGATATGAATTGCCTACTGATGATGCTGACTATGAGAACCGGGGTAGGGGTAATGATGGCAATGGGTTGAGGACTCCGGTGAAAGGGGATTGGGAAATAGGCAAGAGGATTTGGATTGAAAGTTGTAAGTATCTAGAAAGAAATTATTTGGTGTTTAAAACTGGGAACTATCTTTTGCAGCTCAAGTTACTTTGTCCAATTAAAGATCATCTTTGCCAATCGTCCAAACTCCAATTTTTCGTTTTATATTTCAAGAGGTGTGACTCTGGAGTTTCTGTTTGGCTAGCTAAAACTGGTATAGCACAGACTTGCATCTCATCAGCAAGGATCAAAGAGAATGGGAATTGTAGTAGAGGGAGGATGGAGAGCAGCATGTATGATGACACACTGGTGGGGATGACAGATCGGGTCAATATTCGAAGGAGGTGGAACTACATGCATGTAGTGTGGAGAGATGTACTTAGAGAAAATATTGCAACACTTGAGCACCGCATTTTGACACCCTCGTGGATGTTACAGCATAACGATGCCGGAAAAAACGGCAGCAATACCCAAGTTGACTTGTTCCACAAAATTGGACAGGGCTTTTTGCAGGTGCTATTTTTAGCTCATGCATTTGTGGAACTCCAAGGAATTATAAAGCTGAGAATGATTACAATCTCTTTTACAGTATTGAAAATTCACTCAGCATAA 1398 0.4399 MSSGGDSGGGAVGKLFFCHVCSRRVTCSDDSEPFCPICFQGFLEECNQIPEPNPNPSFHFSFSNDDSSDTDSDFPFHPFALLPLLLSSASISRTRPESESFDPFTFLQNHLHGLHADGANIQFEINHPSESEPGFRVPSNFGDYFLGPGLEQLIQQLAENDPNRYGTPPASKNAVKNLPTVTVDDELLNSELNQCAVCQDEFEKGSQVRQMPCKHVYHDDCLLPWLELHNSCPVCRYELPTDDADYENRGRGNDGNGLRTPVKGDWEIGKRIWIESCKYLERNYLVFKTGNYLLQLKLLCPIKDHLCQSSKLQFFVLYFKRCDSGVSVWLAKTGIAQTCISSARIKENGNCSRGRMESSMYDDTLVGMTDRVNIRRRWNYMHVVWRDVLRENIATLEHRILTPSWMLQHNDAGKNGSNTQVDLFHKIGQGFLQVLFLAHAFVELQGIIKLRMITISFTVLKIHSA 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06231 465 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Trre1g06231 465 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 95 240 - -
Trre1g06231 465 SMART ring_2 195 235 IPR001841 -
Trre1g06231 465 FunFam E3 ubiquitin-protein ligase RING1-like 156 242 - -
Trre1g06231 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 242 IPR013083 -
Trre1g06231 465 SUPERFAMILY RING/U-box 174 242 - -
Trre1g06231 465 Pfam Ring finger domain 193 236 IPR001841 -
Trre1g06231 465 CDD RING-H2_RNF126-like 194 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06231 Trre-Chr1 65924050 65929073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06231 139 251 C3H Transcription Factor Family AT5G01980 48.673 1.34e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06231 K11982 - gmx:100785289 342.428