Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06223 ATGGAAAACGACACCACCGCCACCAACAACGCCGCCGCCGCGCCCAACGCCACGCCCAAACTTTCTTCAGGCGGAGTCAAATCCAACAACCACATCAATGAAGAAGAACATTCCAATTTGAATAGCGAGGAAAATATACCAGAAAAATTGGAAGAAAAAGAACAAGAAGAAGAAGATGATGAAGACGAAGAAGAACAACAACCAACTGGATCTGAAACTACCGGTCAACAACCTTCAAGAACGCCTTTCACTAATCTCAGCCAGGTCGACGCTGACCTTGCCCTCGCTCGTACCCTTCAAGAGCAGGAAAGGGCATACATGATGCTGAGAATGAATAATGATGGAAGTGACTACGGAAGTTGGGAAGGTGGGAGCTATTTGCACGACGATGGAGATGATTTTGATGATCTACATGATGGCACTGATGAGGATGAGGATGAGGATGATGAAGATGAAGATAACGAGGAGGAATATGAAGATGAAGACGCATTTGATGTCCATGCTCATGCTACTGTTGGAGAACATGATAATCCTATCATTGAATTTGACCCAGAGCTGTTTTCGAGTGATGAAGCCTATGCAAGAGCATTACAGGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTGCTGGCTCTTGCTGGAATACATGATCAGGACACTGAGGACATGGAGGAACATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAGCTTTCATATGAGGAACTACTGGCATTGGGTGAGGTAGTCGGAACTGAGAGCAGAGGTCTTTCAACTGATACTCTTGCCTGTTTACCTTCAGTCATCTATAAGACGGGGAGTGATCAACATGGGAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGACGAGTCCTTGACAATTCTTTCCTGCAAACATCTGTACCATCCTGAATGCATTAAAAACTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACAGAGGTATCTACTTCTGGGAGCAACTTGTAG 1017 0.4553 MENDTTATNNAAAAPNATPKLSSGGVKSNNHINEEEHSNLNSEENIPEKLEEKEQEEEDDEDEEEQQPTGSETTGQQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDEDEDEDDEDEDNEEEYEDEDAFDVHAHATVGEHDNPIIEFDPELFSSDEAYARALQEAEEREMAARLLALAGIHDQDTEDMEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTLACLPSVIYKTGSDQHGSNDSCVICRVDYEDDESLTILSCKHLYHPECIKNWLKINKVCPVCSTEVSTSGSNL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06223 338 SMART ring_2 287 327 IPR001841 -
Trre1g06223 338 Pfam Ring finger domain 285 327 IPR001841 -
Trre1g06223 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 334 IPR013083 -
Trre1g06223 338 MobiDBLite consensus disorder prediction 69 88 - -
Trre1g06223 338 MobiDBLite consensus disorder prediction 1 29 - -
Trre1g06223 338 MobiDBLite consensus disorder prediction 135 160 - -
Trre1g06223 338 Coils Coil 39 66 - -
Trre1g06223 338 MobiDBLite consensus disorder prediction 30 49 - -
Trre1g06223 338 MobiDBLite consensus disorder prediction 1 88 - -
Trre1g06223 338 MobiDBLite consensus disorder prediction 50 68 - -
Trre1g06223 338 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 35 336 IPR043312 -
Trre1g06223 338 FunFam E3 ubiquitin ligase BIG BROTHER-related 253 334 - -
Trre1g06223 338 SUPERFAMILY RING/U-box 278 333 - -
Trre1g06223 338 MobiDBLite consensus disorder prediction 112 160 - -
Trre1g06223 338 ProSiteProfiles Zinc finger RING-type profile. 287 328 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06223 Trre-Chr1 65868799 65874313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06223 69 231 C3H Transcription Factor Family AT3G19910 50.000 1.50e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06223 K19045 - gmx:100787418 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06223 1 65868799 65874313 Trre1g06223 1 65868799 65874313 ECH