Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre1g06222 | ATGGAAAACGACACCACCGCCACCAACAACGCCGCCGCCGCGCCCAACGCCACGCCCAAACTTTCTTCAGGCGGAGTCAAATCCAACAACCACATCAATGAAGAAGAACATTCCAATTTGAATAGCGAGGAAAATATACCAGAAAAATTGGAAGAAAAAGAACAAGAAGAAGAAGATGATGAAGACGAAGAAGAACAACAACCAACTGGATCTGAAACTACCGGTCAACAACCTTCAAGAACGCCTTTCACTAATCTCAGCCAGGTCGACGCTGACCTTGCCCTCGCTCGTACCCTTCAAGAGCAGGAAAGGGCATACATGATGCTGAGAATGAATAATGATGGAAGTGACTACGGAAGTTGGGAAGGTGGGAGCTATTTGCACGACGATGGAGATGATTTTGATGATCTACATGATGGCACTGATGAGGATGAGGATGAGGATGATGAAGATGAAGATAACGAGGAGGAATATGAAGATGAAGACGCATTTGATGTCCATGCTCATGCTACTGTTGGAGAACATGATAATCCTATCATTGAATTTGACCCAGAGCTGTTTTCGAGTGATGAAGCCTATGCAAGAGCATTACAGGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTGCTGGCTCTTGCTGGAATACATGATCTTTCGTTTTCAATTACAGAGGACACTGAGGACATGGAGGAACATGGTGCTAATTCTCAGGATGCTTGGGAGGATGTTGATCCAGATGAGCTTTCATATGAGGAACTACTGGCATTGGGTGAGGTAGTCGGAACTGAGAGCAGAGGTCTTTCAACTGATACTCTTGCCTGTTTACCTTCAGTCATCTATAAGACGGGGAGTGATCAACATGGGAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATGACGAGTCCTTGACAATTCTTTCCTGCAAACATCTGTACCATCCTGAATGCATTAAAAACTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACAGAGGTATCTACTTCTGGGAGCAACTTGTAG | 1035 | 0.4522 | MENDTTATNNAAAAPNATPKLSSGGVKSNNHINEEEHSNLNSEENIPEKLEEKEQEEEDDEDEEEQQPTGSETTGQQPSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDDGDDFDDLHDGTDEDEDEDDEDEDNEEEYEDEDAFDVHAHATVGEHDNPIIEFDPELFSSDEAYARALQEAEEREMAARLLALAGIHDLSFSITEDTEDMEEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTLACLPSVIYKTGSDQHGSNDSCVICRVDYEDDESLTILSCKHLYHPECIKNWLKINKVCPVCSTEVSTSGSNL | 344 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre1g06222 | 344 | MobiDBLite | consensus disorder prediction | 69 | 88 | - | - | |
| Trre1g06222 | 344 | PANTHER | E3 UBIQUITIN LIGASE BIG BROTHER-RELATED | 35 | 342 | IPR043312 | - | |
| Trre1g06222 | 344 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Trre1g06222 | 344 | MobiDBLite | consensus disorder prediction | 135 | 160 | - | - | |
| Trre1g06222 | 344 | Coils | Coil | 39 | 66 | - | - | |
| Trre1g06222 | 344 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 258 | 340 | IPR013083 | - | |
| Trre1g06222 | 344 | MobiDBLite | consensus disorder prediction | 30 | 49 | - | - | |
| Trre1g06222 | 344 | MobiDBLite | consensus disorder prediction | 1 | 88 | - | - | |
| Trre1g06222 | 344 | SMART | ring_2 | 293 | 333 | IPR001841 | - | |
| Trre1g06222 | 344 | MobiDBLite | consensus disorder prediction | 50 | 68 | - | - | |
| Trre1g06222 | 344 | SUPERFAMILY | RING/U-box | 284 | 339 | - | - | |
| Trre1g06222 | 344 | FunFam | E3 ubiquitin ligase BIG BROTHER-related | 259 | 340 | - | - | |
| Trre1g06222 | 344 | MobiDBLite | consensus disorder prediction | 116 | 160 | - | - | |
| Trre1g06222 | 344 | ProSiteProfiles | Zinc finger RING-type profile. | 293 | 334 | IPR001841 | - | |
| Trre1g06222 | 344 | Pfam | Ring finger domain | 291 | 333 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre1g06222 | Trre-Chr1 | 65868799 | 65874313 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre1g06222 | 69 | 228 | C3H Transcription Factor Family | AT3G19910 | 50.898 | 4.92e-35 | 126 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre1g06222 | K19045 | - | gmx:100787418 | 438.343 |