Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06218 ATGGCGGATGAAAACAACGACAACACAGTCCAAGTCACACTCACAGAGGATTCCATTCCCGACGATCAAGAAAAAACAACAGCTACTCTTGATGTTGCCGCCGAAACGGTGCCGTTGAAGGTCGATGACGTGGCACAAACTACGAATGTTGTTGCGGAAACGGTGTCGTTTAACGACGGTGAAGGAAAATGTTCTCTTAAAGAAGCAGAAGAATCTGTTCCTGATCAAGCTGTGAATATTATCGCTGAAACGACGTCGTTGAAGGATGATGATGTAGTCCCGGTTCAAGGTGATGACGTGGCAGCCGGAGATTCTTCTTCTGTTAAAGTTCCCATTGCGCCAGTGATTTACATCAGAAAGAAAAAGAAACGAGGAAGAAAGAGTTTTGCAGAAATTCAGAAGATGAAGGAAGAGGAAGAAGCGTTGATGAAAACGGAAGAGAATGGAACGAACGAACAGATTGGTAAAGGTGATGATGACGTGGCTTCCGGAGGTTCTATTTCCGCTGAGGTTGCTAACGTGGCAACGGAAAAGAAGCGCAGTAGAAAGAGCAAAACGGAGAAGAAAGCAGAAATAGGAGAAGATTCTGGTTCTTTTGATGTGAGAAAGAGTGCACGGCCGAGGAAGATTATATCGTTTATGGAGGTTGAGTATATATCAGATTTGGATGAGGAAGTGAAGACTAAGGGAAAACGTGGTAAGAAGAAGAAGAAGAATGTCACTGATTCTGATGAAAATAATGCTGTAGAAGAGGAAAGTGTGAAGGGTGAGAAGAAGAAGAGTGCTGTCGATTCTGTTGAAAATGACATTGCAGAAGAAGTGGAAAATGTAAAGGAAGAGAAGAAGAAACCTGGTAGAAAAAGAAAAGAAATTTTTAGTTCTGGAGAAGAATTTGAAGCTGAACAAAAGGGGGGAAATGTGACAAAAGAGAAGAAGAAGAAGAAACCGGGTAGAAAAAGAAAAATAATTTCTAATGAAACAGAAGAGGGGGGAGATGATGAAGCTGTACTCAAGGGGGAAAATGGTGGTTTTGTAAAGGAAGAGAAGATCGAGGATGAACTTGTTGGTGAAAAGAAGTCCGAGAGTGATGTTTTGAAGGAAGAGGATCAGACGACTTTATCTGATGATAATAAAGGTTATTCTCTAAGGAGGACTACTGGAGTGAAGAAATCTAAATACATTGAACCGAAGGTGACAAAATTAACCGAGAGAATTAAGTGGATTGAAGAAGAGTCCTTAATGTGCCATCAATGTCAGAGAAATGATAAGGGCAGGGTTGTCAGATGCACAAAATGCAAACGGAAAAGATATTGCGTATGCTGTATAAACAATTGGTATCCTTACTTGAAAGAAGATGAAATTGCTAAGGCATGTCCGGTGTGCTGTGGTAATTGCAATTGCAAAGCATGCTTGCGATCAACTGCACTTATCAAGGCAATTAAAAAAAACGAAACGGAAGCTAACAAAGATCATGAGATTGAGCTCTCCAAGTATATTTTGAAAGAACTTCTTCCGTATTTAAGACGATTGGATGAAGAACAAATGGCAGAGAGGGAGATAGAAGCGAAGAGACAAGGGCTCTCACTTTCTGAACTAAAAATAGAAGTAGCCGATTGCCCTAAAAATGAGCGGGTGTATTGTGACAACTGCAAAACGTCAATATTTGACTACCATAGAAGCTGTACAAAATGCCCTTTTGACATTTGTCTCCTCTGTTGCGGCGAGCTTCGTGGTGGGAAGCTCCTAGGTGGTGCGGATTCAATTGAGTTTGAGTTTATCTACCGTGGGCGTGATTATCTGCATGGTGAAAATGAAGAGAAAATAAAAAAAAATGAACCTCGTGCTGCTGCCCAGCCTGAGATTCGTGAATGGTCTAGATCTGGATGGCATGCATATAGTGACGGTAGCATTCCCTGTCCAAAAGCCAATAATGATTGTGATCATGGTGTCCTTGAACTGAGAAGCCTACTTGGACCAAATTGCATCTCTGAGTTAGTATGTAATGCAAAAGAACTTGAAGAAACACTTAATCTTCAAGATGCAGAGAAAGGTCTTGATAGTAGGTGTTCTTGTTTGAAGCCTGTTAGGAATGCAAATAATGTACGAAATAACACAAAGAAGGCGGCTTCTCGTGAAGATTCCAGTGACAACTTCTTATACTGTCCCAGGGCTGTAGATTTACACAAAGAGGATTTTAGACACTTTCAATGGCACTGGAGCAAAGGGGAGCCAGTAATTGTAAGCAATGTACTTGAATGTACATCTGGTTTAAGCTGGGAACCACTTGTCATGTGGCGTGCATTCCGCCAGATAAGCAATACCAAACACAAATCACTTTTGGATGTGAAGGCAATTGATTGCTTAGATTGGTGTGAGGGTGATATTAATGTGCACCAATTCTTTACTGGGTACACAAATGGTCGCTCAGATTGGCTTAAGTGGCCTCAGGTTTTGAAATTGAAAGACTGGCCTCCTTCTAATTTATTTGAGGAAAGTTTGCCCCGTCATTGTGCCGAGTTCATATCTTCCTTGCCGTATAAAGAATATACAGACCCTTTCAAAGGTGTCCTTAACCTTGCTGCGAAGTTGCCTGTAGATGTTATACAGCCTGACATGGGCCCAAAAACATATATTGCTTATGGATTTGCTCAGGAGCTTGGGCGGGGTGATTCTGTGACTAAGCTCCATTGTGATATGTCCGATGCAGTAAATGTGTTGACTCATATTGCTAAAGTGGAATTGAAACCCGATGGTATCGATGCCATTAAGAAACTTAAACAAAAGCACCTCAAGCAAGACCAGCGGGAGCTATGTCAACATGGTGATGATCAGGATGTTGAGACCAACGTTGGTGGTGTGTTTGATACTTCACCATCTTCCACAAATGCTTCAAACAAGCAAAATAGTGTCCGAGTCATGGAAAATGAAAAGGGATTATGCAATGGGAAGGCTAATGATGATGGCCTTTCTTCTGGATCAGAGCTCAAAGAGGGGGATTCTTTAGATGGTGCTCTCTGGGATATATTTCGGAGAGAGGATGTACCGAAATTGGAGGAATATCTAAAGAAGCATTTCAGAGAGTTCAGGCATGTGCATTGCTCTCCTTTAAAGCAGGTTGTTCACCCTATCCATGATCAGACATTTTTTTTGACTATTGAGCATAAGAAGAGGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTGTTCAAAAGCTAGGAGATGCTGTTTTCATTCCAGCTGGTTGTCCCCACCAAGTTCGCAATCTGAAATCATGCACAAAGGTTGCGCTTGATTTTGTCTCTCCTGAAAATGTGGGCGAGTGCTTTCGTTTGACAGAAGAATTCCGCAAACTTCCTATAAATCACAGGTCCACAGAGGACAAATTGGAGGTGAAGAAAATGATTATATATGCCATGCTTGATCTGGTCGATAATTTGAGGAAGCGAAGGTCTGGAAAAACCGAGGTTTCAAAGTAA 3480 0.4164 MADENNDNTVQVTLTEDSIPDDQEKTTATLDVAAETVPLKVDDVAQTTNVVAETVSFNDGEGKCSLKEAEESVPDQAVNIIAETTSLKDDDVVPVQGDDVAAGDSSSVKVPIAPVIYIRKKKKRGRKSFAEIQKMKEEEEALMKTEENGTNEQIGKGDDDVASGGSISAEVANVATEKKRSRKSKTEKKAEIGEDSGSFDVRKSARPRKIISFMEVEYISDLDEEVKTKGKRGKKKKKNVTDSDENNAVEEESVKGEKKKSAVDSVENDIAEEVENVKEEKKKPGRKRKEIFSSGEEFEAEQKGGNVTKEKKKKKPGRKRKIISNETEEGGDDEAVLKGENGGFVKEEKIEDELVGEKKSESDVLKEEDQTTLSDDNKGYSLRRTTGVKKSKYIEPKVTKLTERIKWIEEESLMCHQCQRNDKGRVVRCTKCKRKRYCVCCINNWYPYLKEDEIAKACPVCCGNCNCKACLRSTALIKAIKKNETEANKDHEIELSKYILKELLPYLRRLDEEQMAEREIEAKRQGLSLSELKIEVADCPKNERVYCDNCKTSIFDYHRSCTKCPFDICLLCCGELRGGKLLGGADSIEFEFIYRGRDYLHGENEEKIKKNEPRAAAQPEIREWSRSGWHAYSDGSIPCPKANNDCDHGVLELRSLLGPNCISELVCNAKELEETLNLQDAEKGLDSRCSCLKPVRNANNVRNNTKKAASREDSSDNFLYCPRAVDLHKEDFRHFQWHWSKGEPVIVSNVLECTSGLSWEPLVMWRAFRQISNTKHKSLLDVKAIDCLDWCEGDINVHQFFTGYTNGRSDWLKWPQVLKLKDWPPSNLFEESLPRHCAEFISSLPYKEYTDPFKGVLNLAAKLPVDVIQPDMGPKTYIAYGFAQELGRGDSVTKLHCDMSDAVNVLTHIAKVELKPDGIDAIKKLKQKHLKQDQRELCQHGDDQDVETNVGGVFDTSPSSTNASNKQNSVRVMENEKGLCNGKANDDGLSSGSELKEGDSLDGALWDIFRREDVPKLEEYLKKHFREFRHVHCSPLKQVVHPIHDQTFFLTIEHKKRLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRKLPINHRSTEDKLEVKKMIIYAMLDLVDNLRKRRSGKTEVSK 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06218 1159 ProSiteProfiles JmjC domain profile. 852 1117 IPR003347 -
Trre1g06218 1159 Coils Coil 263 283 - -
Trre1g06218 1159 MobiDBLite consensus disorder prediction 175 205 - -
Trre1g06218 1159 MobiDBLite consensus disorder prediction 140 205 - -
Trre1g06218 1159 Pfam JmjC domain, hydroxylase 1004 1100 IPR003347 -
Trre1g06218 1159 SMART cupin_9 833 1117 IPR003347 -
Trre1g06218 1159 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 123 1152 IPR045109 GO:0032454|GO:0033169
Trre1g06218 1159 MobiDBLite consensus disorder prediction 140 154 - -
Trre1g06218 1159 MobiDBLite consensus disorder prediction 237 308 - -
Trre1g06218 1159 Coils Coil 662 682 - -
Trre1g06218 1159 MobiDBLite consensus disorder prediction 222 380 - -
Trre1g06218 1159 ProSiteProfiles Zinc finger RING-type profile. 415 461 IPR001841 -
Trre1g06218 1159 MobiDBLite consensus disorder prediction 321 374 - -
Trre1g06218 1159 SUPERFAMILY Clavaminate synthase-like 731 1137 - -
Trre1g06218 1159 Gene3D Cupin 719 1126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06218 Trre-Chr1 65841909 65852641 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre1g06218 JmjC 1.4e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06218 K15601 - gmx:100805723 1161.36