Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06217 ATGGCGGGAGAAGAGGACGACGAAGTCACATTTACAGTCAAAATCACAGTCACACTCACCATTCCTCCTCCACAAACACAACAACCTACTACTGTGGATGCTAACCCCCTAACAGTGCCGTCGAATGGTGATGAAGTGGCACGAGCCATGGATGTTGCCACCGAGATTGTATTATTAAGCGATAACGACGATGGTTCGGTTAAAGGTGATGGCGTGGTAGCAATAGAAGATTCTTCTGATAGTGATCGAGAAAAACAAGATATGGATAGTGATTCGTTGAAGGACGATGAAGGTTCGATTGAAGGTGATGACGTGGCATTCGGAGATTCTCCTTCTGTTAAACCTGCTCCGGCGACAGTGATGCTATGCAGAATGAAAGAGAAAACGTTACATAAATGTGATTACGTGGCAGCCAGAGACTCTATTTCTGTTGAAGTTGCCGGAGAAAATCATGGTAGTAGAAAGAGGAAATCGGAGAATGAAGCCGAAACGGAGAAGGAGAAACCTGGTAGTAAAAGAATGATAGTAATTGATATCAGTTCTGATGAAAATGATGAAGCTGCACAAGAGGGGAATAATGATGATTTTGTTGAGAAAGAGAAAAACAAACCTATTGCGGAGAATGAACTGATCAGTGAAGAACAGACAGTGCCTGAAATCAACAAGAGAAATTCTAAGTGGATTGAAGAGGAATCAACAATTTGCCATCAATGCCAGAGAAATGATAAGGGCAGGGTTGTCAGATGCACAAACTGCAAACAGAAAAGATTTTGCATACCATGTTTAACTAAATGGTATCCTAAATTGAAAGAGAATGATATCGCCAAGACATGTCCTGTGTGCTGTGGTAATTGCAATTGCAAAGCATGCTTGCGATCAACTAAACTTATCGAGGCAATTAAACAAAACAATATGGGCACTAACAAAGATCGCGAGGTTGAGCTCAACAAGTATATGTTGAAAAAACTTCTTCCGTATTTAAGACAGTTGGATGGAGAACAAATGATTGAGAAGAAAAGAGAAGCCAAAAGACTGGGGATCCCAGTAGCATATTATGCTAAAAATAAGCGTGTGTACTGTGACAATTGCAAAACATCAATATTCGACTACCATAGAAGTTGTACAAAATGCTCTTTTGACATTTGTCTCATATGTTGCCACGAGCTTCGTGGTGGGAAGCTTCCCGGTGGTGCAGATCCAATTGAGTTTGATTTTGTCTCCCAAGGTTTTAATTATTTGCACGGTGGAAACGAAGAGAGAATAAAAAAAGTTGAAGCCCGTATTGCTGCCCAGCCTGAGATTCGTGAATGGTCAAGATCTGGATGGCATACATTTAGTGATGGTAGCATTCCCTGTCCAAATTCCAATAATTATTGTGATCATGGTTTCCTTGAACTGAGAAGCATACTTGGACCAAATTGCATCTCCGAGTTAGTATGTAAAGCAAAAGAACTTGAAGAAACACTTAATCTTCAAGATGCAGAGGAGACTCTTGTTAGTAGGTGTTCTTGTTTGAAGCCTGTAAGGAATGCAGATGATATACACAATAACACAAGGAAGGCAGCTTCTCGTGAAGATTCCAGTGACAACTTCTTATATTGTCCCAGGGCTGTAGATCTACACAAAGAGGATTTTAGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATCTACATCTGGTTTAAGTTGGGACCCGCTTGTCATGTGGCGTGCATTCCGTCAGATAAGCAATACCGAGCACAAAGAGCTTTTGGATGTGAAGGCAATTGATTGCTTATATTGGTCCGAGGCAGAAATTAATGCGCACCAATTCTTTACTGGGTACACAAATGGTCACTTGGATTGGTTTAAGCGGCCACAGGTTTTGAAATTGAAAGATTGGCCTCCTAATTTATTTGAAGAAAGTTTGCCTCGTCATTGTGCCGAGTTCATATCTTCCTTGCCGTATAAAGAATATACAGACCCTTTCAAAGGTGTTCTTAACCTTGCTGCAAAGTTGCCTGTAGATGTTATACAGCCTGACATGGGCCCAAAAACATATATTGCTTATGGATTTGCTCAGGAACTTGGGCGGGGTGATTCTGTGACTAAGCTCCATTGTGATATGTCTGATGCAGTAAATGTGTTGACTCATATTGCTAAAGTGGAATTGAAATCTGATAGCATTGAAGCCATTAAGAAACTGACACAAATGCACCTCAAGCAAGACAAGAGGGAGCTACATATATATGGTGATAATCGAGATGGAGAGACCGATGTTGGCGTGCTTGATAATTCATTGTCTTGTGGGGATTCTTTAGATGGTGCTCTCTGGGACATATTTCGGAGAGAGGATGTACCTGAATTGGAGGAATATTTGAAGAAGCATTTCAGAGAGTTCAGGCATGTACATTGCTCTCCTTTAAAGCAGGTTATTCACCCCATCCATGACCAGACCTTTTATCTGACTCTGGAGCATAAGAGGAAACTTAAGGAAGAGTATGGAATTGAGCCTTGGACTTTTATTCAGAAGCTAGGAGATGCTGTTTTCATTCCTGCCGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGCATCAAGGTCGGGCTTGATTTTGTTTCACCTGAAAATGTTGGCGAGTGTTTCCGTTTGACAGAGGAATTCCGTAAACTTCCGATAAACCACATGTCCGTCAAAGACAATTTGGAGGTGAAGAAAATGACTATATATGCTATGCTTGATGTGGTTAACAAATTAGAGAAAGCAAGGTTAGATCGCAAACTTTTGGCCCTTTGGTTATGGATTTGA 2814 0.4112 MAGEEDDEVTFTVKITVTLTIPPPQTQQPTTVDANPLTVPSNGDEVARAMDVATEIVLLSDNDDGSVKGDGVVAIEDSSDSDREKQDMDSDSLKDDEGSIEGDDVAFGDSPSVKPAPATVMLCRMKEKTLHKCDYVAARDSISVEVAGENHGSRKRKSENEAETEKEKPGSKRMIVIDISSDENDEAAQEGNNDDFVEKEKNKPIAENELISEEQTVPEINKRNSKWIEEESTICHQCQRNDKGRVVRCTNCKQKRFCIPCLTKWYPKLKENDIAKTCPVCCGNCNCKACLRSTKLIEAIKQNNMGTNKDREVELNKYMLKKLLPYLRQLDGEQMIEKKREAKRLGIPVAYYAKNKRVYCDNCKTSIFDYHRSCTKCSFDICLICCHELRGGKLPGGADPIEFDFVSQGFNYLHGGNEERIKKVEARIAAQPEIREWSRSGWHTFSDGSIPCPNSNNYCDHGFLELRSILGPNCISELVCKAKELEETLNLQDAEETLVSRCSCLKPVRNADDIHNNTRKAASREDSSDNFLYCPRAVDLHKEDFRHFQWHWSKGEPVIVSNVLESTSGLSWDPLVMWRAFRQISNTEHKELLDVKAIDCLYWSEAEINAHQFFTGYTNGHLDWFKRPQVLKLKDWPPNLFEESLPRHCAEFISSLPYKEYTDPFKGVLNLAAKLPVDVIQPDMGPKTYIAYGFAQELGRGDSVTKLHCDMSDAVNVLTHIAKVELKSDSIEAIKKLTQMHLKQDKRELHIYGDNRDGETDVGVLDNSLSCGDSLDGALWDIFRREDVPELEEYLKKHFREFRHVHCSPLKQVIHPIHDQTFYLTLEHKRKLKEEYGIEPWTFIQKLGDAVFIPAGCPHQVRNLKSCIKVGLDFVSPENVGECFRLTEEFRKLPINHMSVKDNLEVKKMTIYAMLDVVNKLEKARLDRKLLALWLWI 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06217 937 Coils Coil 475 495 - -
Trre1g06217 937 FunFam Transcription factor jumonji domain-containing protein 529 900 - -
Trre1g06217 937 MobiDBLite consensus disorder prediction 182 201 - -
Trre1g06217 937 Pfam JmjC domain, hydroxylase 780 874 IPR003347 -
Trre1g06217 937 MobiDBLite consensus disorder prediction 149 172 - -
Trre1g06217 937 SMART cupin_9 645 891 IPR003347 -
Trre1g06217 937 MobiDBLite consensus disorder prediction 147 172 - -
Trre1g06217 937 ProSiteProfiles Zinc finger RING-type profile. 235 281 IPR001841 -
Trre1g06217 937 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 148 925 IPR045109 GO:0032454|GO:0033169
Trre1g06217 937 Gene3D Cupin 532 900 - -
Trre1g06217 937 MobiDBLite consensus disorder prediction 60 116 - -
Trre1g06217 937 MobiDBLite consensus disorder prediction 75 101 - -
Trre1g06217 937 ProSiteProfiles JmjC domain profile. 664 891 IPR003347 -
Trre1g06217 937 SUPERFAMILY Clavaminate synthase-like 544 899 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06217 Trre-Chr1 65828596 65835913 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre1g06217 JmjC 7.7e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06217 K15601 - csav:115721711 850.506