LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g06215	ATGGCGGAGGAAGAGAACGAAGTCACATATACAGTCAAAATCACAGTCACACTCACCATTCCTCCTCCACAAACACAATCCATGGATGTTGTTGTCGCCGAAACTGCGTTGTTAAGCGACGACGGCGGTTCGGTTGAAGGTGATGACGTGGCCGCAACAGAAGAACCTGATACTGATAGAGGAAAACAAGATATGGATATTGAAGACGATGAAGGTTCGATTGAAGGTGATGACGTGGTAGACAGAGATTCTTCTTCTGTTAAACCTGCTCCGGCGACAGTGATGTATGGCAAAATAAAAAAGAAACGTGGAAGAAAGAGTTTTGCAGAAATTCAGAAGATGAAGGAAGAGGAAGAAGCGTTGATGAAAACGGCAGAGAATGGAACGAACGAACAGACTGGTAGGAAGAAGAAGAATATCGCTGATTCTGATAGAAATAATGTTGTAGAAGAGGAAAGAGTGAAGGGAGAGAAGAAGAAACCTGGTAGGAAGAAGAAGAGTGTTATTGATTCTGTTGAAAATAATGTTGCAGAAGAAGTGGAAAATGTAAATGAAGAGAAGAAGAAACCTGGTAGAAAAAGAAAAGAAATTTTTAGTTCTGGAGAAGAATCTGAAGCTGAACAAAAGGGGGGAAATGTGACAAAAGAGAAGAAGAAGAAACCGGGTAGAAAAAGAAAAATAATTTCTAATGAAACAGAAGAGGGGGAAGACGATGAAGCTGTACTAGATGGGGAAAATGGTGGTTTTGTAAAGGAAGATAAGATTGAGGATGAACTTGTTGGTGAAAAGAAGTCCGAGAGTGATGTTTTGAAGGAAGAGGATCAGACAACTTTATCTGATGATAATAAAGGTTATTCTCTAAGGAGGACTACTGGAGTGAAGAAACCTAAATACATTGAACCGAAGGTGACAAAATTAACCAATAGAACTAAGTGGATTGAAGAAGAGTCCTTAATGTGCCATCAATGTCAGAGAAATGATAAGGCCAGGGTTGTCCGATGCACAAAATGCAAACGAAAAAGATATTGCGTATGCTGTATAAACAATTGGTATCCTCACTTGAAAGAAGATGAAATTGCTAAGGCATGTCCGGTGTGCTGTGGTAATTGCAATTGCAAAGCATGCTTGCGGTCAACTGCACTTATCAAGGCAATTAAAAAAAACAAAACGGAAGCTAACAAATATCATGAGATTGAGCTCTCCAAGTATATGTTGAAAGAACTTCTTCCGTATTTAAGACGATTGGATGAAGAACAAATGGCAGAGAGGGAGATAGAAGCGAAGAGACAAGGGCTCTCACTTTCTGAACTAAAAATAGAAGTAGCCGATTGCCCTAAAAATGAGCGGGTGTATTGTGACAATTGCAAAACCTCAATATTTGACTACCAGAGAAGTTGTACAAAATGCCCTTTTGACATTTGTCTCCTCTGTTGCGGCGAGCTTCGTGGTGGGAAGCTCCTAGGTGGTGCGGATTCAATTGAGTTTGAGTTTATCTACCGTGGGCATGATTATCTGCATGGTGGAAATGAAGAGAAAGTTAAAAAAAATGAACCTCGTGCTGCTGCCCAGCCTGAGATTCGTGAATGGTCTAGATCTGGATGGCATGCATATAGTGACGGTAGCATTCCCTGTCCAAAAGCCAATAATGATTGTGATCATGGTGTCCTTGAACTGAGAAGCATACTTGGACCAAATTACATCTCTGAGTTAGTATGTAATGCAAAAGAACTTGAAGAAACACTTAATCTTCAAGATGCAGAGAAAGGTCTTGATAGTAGGTGTTCTTGTTTGAAGCCTGTTTGGAATGCAAATGATATACAAAATAAGATAAGGAAAGCAGCTTCTCGTGAAGATTCCAGTGACAACTTCTTATATTGTCCCAGGGCTGTAGATCACAAAGAGAATTTTAGACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATATACTTGAATCTACATCCGGTTTAAGCTGGGAACCGCTTGTCATGTGGCGTGCATTCCGTCGGATAAGAAATACCAAGCACAAAACACTTTTGGATGTGAAGGCAATTGATTGCTTAGATTGGTCCGAGGTAGATATTAATGTGCACCAATTCTTTACTGGGTACACAAAAGGTCGCTTGGATTGGCTTAAGTGGCCTCAGGTTTTGAAATTGAAAGACTGGCCTCCTTCTAATTTATTTGAAGAAAGTTTGCCCCGTCATTGTGCCGAGTTCATATCTTCCTTGCCGTATAAAGAATATACAGACCCTTTCAAAGGTGTTCTTAACCTTGCTGCGAAGTTGCCTGTAGATGTTATACAGCCTGACATGGGCCCAAAAACAAATATTGCTTATGGATTTGCTCAGGAGCTTGGGCGGGGTGATTCTGTGACTAAGCTCCATTGTGATATGTCCGATGCAGTAAATGTGTTGATTCATATTGCTAAAGTGGAATTGAAACCTGATGGTATCGATGCCATTAAGAAACTTAAACAAAAGCACCTCAAGCAAGACGAGCGGGAGCTATGTCAACATGGTGATGATCAGGATGGAGAGACCAACGTTGGTGGTGTGCTTGATACTTCACCGTCTTCCACAAATGCTTCTGACAAGCAAAATAGTGTCCGAGTCGTGGAAAATGAAAAGGGATTAGGCAATGGGAAGACTGCTGATGGTGACCTTTCTTCTGGATCAGAGGTCAAAGAGGGGGATTCTTTAGATGGTGCTCTCTGGGATATATTTCGGAGAGAGGATGTACCGGAATTGGAGGAATATCTAAAGAAGCATTTCAGAGAGTTCAGGCATGTGCATTGCTCTCCTTTAAAGCAGGTTATTCACCCCATCCATGATCAGACCTTTTATCTGACTCTGGAGCATAAGAGGAAACTTAAGGAGGAGTATGGGATTGAGCCTTGGACTTTTATTCAGAAGCTAGGAGATGCTGTTTTCATTCCTGCCGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGCATCAAGGTTGGGCTTGATTTTGTCTCACCTGAAAATGTTGGTGAGTGTTTCCGTTTGACAGAGGAATGCCGTAAGCTTCCAATAAACCACATGTCCGCCAAGGACAAGTTGGAGGTGAAGAAAATGACTATATATGCTATGCTTGATGTGGTTGAAAAATTGGAGGAAGCAAGGTGGAAGAAACCAATGATTTAG	3186	0.4134	MAEEENEVTYTVKITVTLTIPPPQTQSMDVVVAETALLSDDGGSVEGDDVAATEEPDTDRGKQDMDIEDDEGSIEGDDVVDRDSSSVKPAPATVMYGKIKKKRGRKSFAEIQKMKEEEEALMKTAENGTNEQTGRKKKNIADSDRNNVVEEERVKGEKKKPGRKKKSVIDSVENNVAEEVENVNEEKKKPGRKRKEIFSSGEESEAEQKGGNVTKEKKKKPGRKRKIISNETEEGEDDEAVLDGENGGFVKEDKIEDELVGEKKSESDVLKEEDQTTLSDDNKGYSLRRTTGVKKPKYIEPKVTKLTNRTKWIEEESLMCHQCQRNDKARVVRCTKCKRKRYCVCCINNWYPHLKEDEIAKACPVCCGNCNCKACLRSTALIKAIKKNKTEANKYHEIELSKYMLKELLPYLRRLDEEQMAEREIEAKRQGLSLSELKIEVADCPKNERVYCDNCKTSIFDYQRSCTKCPFDICLLCCGELRGGKLLGGADSIEFEFIYRGHDYLHGGNEEKVKKNEPRAAAQPEIREWSRSGWHAYSDGSIPCPKANNDCDHGVLELRSILGPNYISELVCNAKELEETLNLQDAEKGLDSRCSCLKPVWNANDIQNKIRKAASREDSSDNFLYCPRAVDHKENFRHFQWHWSKGEPVIVSNILESTSGLSWEPLVMWRAFRRIRNTKHKTLLDVKAIDCLDWSEVDINVHQFFTGYTKGRLDWLKWPQVLKLKDWPPSNLFEESLPRHCAEFISSLPYKEYTDPFKGVLNLAAKLPVDVIQPDMGPKTNIAYGFAQELGRGDSVTKLHCDMSDAVNVLIHIAKVELKPDGIDAIKKLKQKHLKQDERELCQHGDDQDGETNVGGVLDTSPSSTNASDKQNSVRVVENEKGLGNGKTADGDLSSGSEVKEGDSLDGALWDIFRREDVPELEEYLKKHFREFRHVHCSPLKQVIHPIHDQTFYLTLEHKRKLKEEYGIEPWTFIQKLGDAVFIPAGCPHQVRNLKSCIKVGLDFVSPENVGECFRLTEECRKLPINHMSAKDKLEVKKMTIYAMLDVVEKLEEARWKKPMI	1061

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g06215	1061	MobiDBLite	consensus disorder prediction	854	873	-	-
	Trre1g06215	1061	MobiDBLite	consensus disorder prediction	180	215	-	-
	Trre1g06215	1061	MobiDBLite	consensus disorder prediction	119	286	-	-
	Trre1g06215	1061	MobiDBLite	consensus disorder prediction	244	279	-	-
	Trre1g06215	1061	Pfam	JmjC domain, hydroxylase	908	1004	IPR003347	-
	Trre1g06215	1061	SMART	cupin_9	737	1021	IPR003347	-
	Trre1g06215	1061	PANTHER	JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN	112	1055	IPR045109	GO:0032454\|GO:0033169
	Trre1g06215	1061	Coils	Coil	111	131	-	-
	Trre1g06215	1061	MobiDBLite	consensus disorder prediction	843	901	-	-
	Trre1g06215	1061	MobiDBLite	consensus disorder prediction	39	107	-	-
	Trre1g06215	1061	ProSiteProfiles	Zinc finger RING-type profile.	320	366	IPR001841	-
	Trre1g06215	1061	SUPERFAMILY	Clavaminate synthase-like	633	1039	-	-
	Trre1g06215	1061	Gene3D	Cupin	619	1030	-	-
	Trre1g06215	1061	Coils	Coil	169	189	-	-
	Trre1g06215	1061	Coils	Coil	567	587	-	-
	Trre1g06215	1061	ProSiteProfiles	JmjC domain profile.	756	1021	IPR003347	-
	Trre1g06215	1061	MobiDBLite	consensus disorder prediction	119	172	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g06215	Trre-Chr1	65816995	65826383	Dispersed/Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Trre1g06215		JmjC	5.8e-13	CL0029

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g06215	K15601		-	gmx:100780803	1111.67