Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06213 ATGTATAATCCCTTTCATTACTCCACCAAAAGACTAAGATTGTTAAAAGTCTCCCTTTCTCTCTCTCTCTCTCTCTCGTCCTCCTGCCCTCTCACGTTGCTTCTCTCTTTCTCTGCTCTCTCTCAGACTGCTTCTCTCTCTTTCTCTGCCCTCGCCACAGAAACCTCCACCACCGCCGATAGAAAAGGTCGCCGTCGTTCCTCGTGCCGTCGTCGACTCATGATGGTGTTGTCTGCTTTCTTGCTTGCAGAGAAGGAGAAGAACTGTAGAACATGTATTGTGCTTCCCCTGCAAGAGTATGCCGAGTTGAAGACATGTTTGAGTCATGTTCCTGAAGTTTCCAACAAAGAAGAAACTGCTGGTGGGGTATTGGAGAATTGGCCACAGAGACTTGAGTTTGTTTCATATATGGAAGGAATTCCAAGCAAAGCTAAAAATTTACCGATGAATTTGTTATTAGGAAAGCTGTATCGAATTTCACATGGCCGAGCTGTTGTTGCTATTTACAAAGAATGCCTAAGGCTGCAATATCATCATGGAGTTCGACTGTCATCCTTCTTTCTGGAAAACAAGGGTCCCATAATTGCCGTCGAATATATTGTTGGAGGTTATTGTATTATGAGGTTGGATAATATAGAAGAAGCTAGCAAGGATACACCTGGCAGAAGTTTCTATTATGCAATGGAGCCTCTTCGCCACATGTGTCTTTTTTTGCAGTGGTCGCTGAACACCATGGAGATAGCGCTATTCCCTTCAGACGTTTCTGTCGCGGTGTTGGTAGGACTGCACAAGCTAAGAATAGACATTCCAATGGGCAAGAATTCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTGGATGCTCTGTATGTTTCTCATATCCAGGTCAATCAAGCTCAAAAGCAAAGACGCCGTACCTACAGGGCACATGGAAGAATCAATCATATCCTACATGTCATCTCCATGCCTCATTGA 975 0.441 MYNPFHYSTKRLRLLKVSLSLSLSLSSSCPLTLLLSFSALSQTASLSFSALATETSTTADRKGRRRSSCRRRLMMVLSAFLLAEKEKNCRTCIVLPLQEYAELKTCLSHVPEVSNKEETAGGVLENWPQRLEFVSYMEGIPSKAKNLPMNLLLGKLYRISHGRAVVAIYKECLRLQYHHGVRLSSFFLENKGPIIAVEYIVGGYCIMRLDNIEEASKDTPGRSFYYAMEPLRHMCLFLQWSLNTMEIALFPSDVSVAVLVGLHKLRIDIPMGKNSESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINHILHVISMPH 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06213 324 PANTHER 60S RIBOSOMAL PROTEIN L17 271 315 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trre1g06213 324 Pfam Ribosomal protein L22p/L17e 273 318 IPR001063 GO:0003735|GO:0005840|GO:0006412
Trre1g06213 324 Gene3D Ribosomal protein L22/L17 269 321 IPR036394 GO:0003735|GO:0005840|GO:0006412
Trre1g06213 324 SUPERFAMILY Ribosomal protein L22 273 318 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06213 Trre-Chr1 65799630 65803276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06213 273 314 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 90.476 5.02e-20 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06213 K02880 - egr:104415686 85.5001