Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06212 ATGGCGGAGGAAGAGGATGAGGAAGTCACATATACAGTCAAAATCACAGTCACACTCACCATTCCTCCTCCACAAATACAACAACCTACTACTACTACTGTGGATGCTAACGCCGAAACAGTGCCGTCGAATGGTGATGAAGTGGCACGAGCTATTATATTATTTAGCGACGACGATGATGGTTCGGTTAAAGGTGATGACGTGGTAGTAATAGAAGATTCTGATAGTGATCGAGAAAAACAAGATATGGAAACAGCGTCGTTAAACAACGGCAATGATGTTGAAGCAGCTGAAGAAGAATCTGTTCCTGATCGAGAAAAACAAGCTACGGCGTCATTGACGGACGATGAACATTCCGTTGAAGATGACGACGTGGCAGCCGAAAGCTCTTCGTTTGGAAAGAAACGCGGCAAAAAGAGAAAAAAAGTAAAGGAAGCTGAAATGTATCCTTTAAGGGGAAATGCTAAGTGGATTGACGAGTCCAAGTCCACAATGTGCCATCAATGTCAAAGAAATGATAAGGGCAGGGTTGTCAGATGCACAAAATGCAAACGGAAAAGATTTTGCATACCCTGTTTAACTAATTGGTATCCTAAATTGAAAGAGAGTGATGTTGCCGAGGCGTGTCCTGTATGCCGTGATAATTGCAATTGCAAAGCATGCTTGCGATCTTTTAAACTCATCAATCAAATTAAGCATACGGCTAAAAGTGAAGCCAGCAAAGATGAGGAGGTTGAGTTCTCAAAGTATTTGTTGAAAGGACTTCTTCCATATTTAAGACAGTTGGATGAAGAACAAATGATTGAGAAGAAAAGAGAAGCCAATAGACAAGGGATCCCACTTTCAAAGCTAAAAATAAAATCGGCTGATTATTCTAAAGATGAGCGTGTGTACTGTGACAACTGCAAAACATCAATATTTGACTACCACAGAACCTGTACAAAATGCTCTTTTGACCTTTGCCTGCTCTGTTGCTGCGAGCTTCGTGGTGGGCAACTTCTAGGTGGTGCAGATCCAATTGAGCTTGAGTATATTTTCCGAGGTCGCGATTATCTACATGGTGGAACTGCAGGAAAACAGGTTAAAATAAATGCATCACAAGCTCAAGACGAGCCTACGACTCGTGACTGGTCAAGATCTGGGTGGTGTGCAAATGGAGATGGTAGCATTCCCTGTCCGAAAGCCAATAATAAATGTGGTCATGGTTTCCTTGAACTGAGAAGGATACTTCCTCCAAATTGCATCTCAGAGTTAGTATGTAAAGCAAAAGAACTTGCAGAAACATTTAAGTTGCAAGATGCAGAGGAGACTCTTGATAATGGGTGTTCCTGCTTGAAGCTTGTTAGGAATGCGGATGATATAAACAATAACACAAGGAAGGCAGCTTTTCGTGAAGATTCTGATGACAACTTTTTATTTTGTCCTAGAGCTGTAGATGTGCATCGTGAAGATTTAAGACATTTTCAGAGTCATTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTTGAATGTTCATCTGGTTTAAGTTGGGAACCGCTAGTCATGTGGCGTGCATTCCGTCAAATAACCAATTCCAAACACGATGTATTTTTGGATGTGAAGGCAGTTAATTGCTTAGATTGGTGTGAGGGAGATATTAATATCCACCAATTCTTTACTGGGTACATAAATGGTCGAATGGATTGGCTTAATTGGCCTCAAGTGTTGAAATTAAAAGATTGGCCTCCTTCTGATTTATTTCAGGAACTTTTACCTCGTCATCATGCTGAGTTCATATCTTTCTTGCCTTATAAAGAATATACAGATCCTTTTAAAGGTTCTCTCAACCTTGTTGTGAAGTTGCCGGATTATTGTGTAATGCCAGACATGGGGCCAAGAACATATATTGCTTATGGATTTGCTCAGGAGTTTGGACGTGGTGATTCCGTGACTAAGCTCCATTGTGATGCGTCTGATGCAGTAAATGTGTTGACTCATATCGCTAAAGTGGAACTGAAACCTGAGCAAATTGCTGCTATTAAGAAATTGACACGAAGGCACCTTGAGCAAGATAAGAGGGAGCTACATGTTGATGGGAAGGTGGTTGAGATATTTCATCAACACTCTGGCACTAATGATGATGACCTGTCTTGTTGGCCAGAGCTGAAAGAGGTTGAGAAAGTAACAATGAAACAAGAAAACAGTTCATTTGTTGGAGGGGATTCCTTGGAAGGTGCTCTCTGGGATGTTTTTCGCAGAGAGGATGTACCCAAATTACAGGAATATATAAAGAAACATATCAGAGAGTTCAGACATATCCATTGCAGTCCTTTACAGCAGATTATTCACCCAATTCATGATCAAACCGTTTATCTAACTATGGACCATAAGAAGAAACTTAAGGAGGAGTATGGAATTGAACCTTGGACTTTTATCCAAAAGCTAGGAGATGCCGTTTTTATTCCTGCTGGTTTGCCTCACCAAGTCAGAAATCTGAAGTCATGCATCAAGGTTGCACTTGATTTTGTCTCTCCTGAACATATTGGCGAGTGCTTCCGTTTGACAGAGGAATGTCGCAAGCTTCCGATAAATCACAAATCAGCTGAGGACAAATTTGAGGTGAAGAAAATTGTCATACATGCTATGCTTGACGTGGTTGAAAAATTAGAGAAAGCAAGAACTGCGGAAACCAAGGCTCCTGTGTAA 2691 0.4106 MAEEEDEEVTYTVKITVTLTIPPPQIQQPTTTTVDANAETVPSNGDEVARAIILFSDDDDGSVKGDDVVVIEDSDSDREKQDMETASLNNGNDVEAAEEESVPDREKQATASLTDDEHSVEDDDVAAESSSFGKKRGKKRKKVKEAEMYPLRGNAKWIDESKSTMCHQCQRNDKGRVVRCTKCKRKRFCIPCLTNWYPKLKESDVAEACPVCRDNCNCKACLRSFKLINQIKHTAKSEASKDEEVEFSKYLLKGLLPYLRQLDEEQMIEKKREANRQGIPLSKLKIKSADYSKDERVYCDNCKTSIFDYHRTCTKCSFDLCLLCCCELRGGQLLGGADPIELEYIFRGRDYLHGGTAGKQVKINASQAQDEPTTRDWSRSGWCANGDGSIPCPKANNKCGHGFLELRRILPPNCISELVCKAKELAETFKLQDAEETLDNGCSCLKLVRNADDINNNTRKAAFREDSDDNFLFCPRAVDVHREDLRHFQSHWSKGEPVIVSNVLECSSGLSWEPLVMWRAFRQITNSKHDVFLDVKAVNCLDWCEGDINIHQFFTGYINGRMDWLNWPQVLKLKDWPPSDLFQELLPRHHAEFISFLPYKEYTDPFKGSLNLVVKLPDYCVMPDMGPRTYIAYGFAQEFGRGDSVTKLHCDASDAVNVLTHIAKVELKPEQIAAIKKLTRRHLEQDKRELHVDGKVVEIFHQHSGTNDDDLSCWPELKEVEKVTMKQENSSFVGGDSLEGALWDVFRREDVPKLQEYIKKHIREFRHIHCSPLQQIIHPIHDQTVYLTMDHKKKLKEEYGIEPWTFIQKLGDAVFIPAGLPHQVRNLKSCIKVALDFVSPEHIGECFRLTEECRKLPINHKSAEDKFEVKKIVIHAMLDVVEKLEKARTAETKAPV 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06212 896 SUPERFAMILY Clavaminate synthase-like 484 879 - -
Trre1g06212 896 SMART cupin_9 586 854 IPR003347 -
Trre1g06212 896 ProSiteProfiles JmjC domain profile. 605 854 IPR003347 -
Trre1g06212 896 MobiDBLite consensus disorder prediction 98 116 - -
Trre1g06212 896 Pfam JmjC domain, hydroxylase 740 837 IPR003347 -
Trre1g06212 896 ProSiteProfiles Zinc finger RING-type profile. 166 213 IPR001841 -
Trre1g06212 896 FunFam Transcription factor jumonji domain-containing protein 469 863 - -
Trre1g06212 896 Gene3D Cupin 471 863 - -
Trre1g06212 896 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 76 890 IPR045109 GO:0032454|GO:0033169
Trre1g06212 896 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 159 235 IPR018866 -
Trre1g06212 896 MobiDBLite consensus disorder prediction 72 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06212 Trre-Chr1 65791691 65797551 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre1g06212 JmjC 3.7e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06212 K15601 - gmx:100780803 1052.35