Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06211 ATGATTTTGCCAAGGAAAAATTTAAATAAAAACGGCGACAAACCATCCGGAGACTCTGTTTCGGTCGAAATTATCGGCAAGCGGGGTAGCAAGAGGAAAACTGTCGTTAGTAGTTCTTCTGAAGAAGACGATGAAAATGATCGTGCTAAAATCAACAACGCTCCAGCGAAGAGTTTTGCAGAAATTCAAAGGATGATCGAAGAAATTGACGGTGAAGATGAAGTAACATCGGGATGCTCTGTTTCAGTTAAAGTTGCAGGAGAGGGAGAAAATCGTGGGAAAAGAAAACTCAAATGCATTGAATCTCAGGCACCACAATTCAACAAGAAGAGAAATTCTAAGGGGATTGAAGAGGAGTCCACAACGTGCCATCAATGTAAGAGAAATGATAAGGGCAGGGTTGTCAGATGCACAAATTGCAAAAGGAGAAGATTTTGCATACTTTGTTTAACTAAATGGTATCCTAAGTTAAAAGAGAGTGATGTTGCTGAGGCGTGTCCAGTATGCCGTGATAATTGCAATTGCATAGCATGCTTGCGATCTTCCAAACTCATCAATGAAATGAAGGGTACAACTAAAAGTAAAACCGGCAAGGACGAGGAGGAGTTCTTGAAGTATCTGCTGAAAAAACTTCTTCCATGTTTAAGACAATTGGATGAAGAACAGATGCTTGAGAAGGAAAGAGAAGCCAATAGACAAGGACTCTCAATCTCGAAGCTTAAAATTAAAGTGGCAGATTGCCTTAAAGATGACCGCGTGTACTGTGACAATTGCAAAACGTCAATATTTGACTTCCACAGAACATGTACAAAGTGTTCTTTCGACCTTTGTGTCCGTTGTTGCTACGAGACTCGTGAGTGTTCAAGATCGGGGTGGAGTGCAAATGGAGATGGTAGCATTCCCTGCCCGAAAGGGAATAATGAATGCAATCACGGTTTCCTAGAACTGAGAAGGCTACTACCTCCAAACGGCATCTCTAAGTTATTACGCAAAGCAGAAGAACTTGCAGAAGCATATAAGCTTCAAGAGGCAGAGGAGGCTGTTGATAATAGGTGTTCATGCTTGAAGCCAGTTAGGAACGCCGGTGATATACACAATAACAAAAGGAAGGCTGCTTTTCGTGAAGATTCCAATGACAACTTTTTATATTGTCCTAGAGCTGTAGATGTACATCATGAAGGTTTAAGACATTTTCAGTGCCATTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTCGAATGTTCATCTGGTTTAAGTTGGGAACCACTGGTCATGAGTCGTGCATTCCGTCAAAAAACCAAGTCCAAGCAAGATGCAATTTTGAATGTGAAGGCAGTTAATTGCTTAGATTGGTGCGAGGGAGATATTAATATCCATCAATTCTTTAACGGGTACATAAATGGTCTCAAGGATCGGAGTGATTGGCCTCAGGTGTTGAAATTAAAAGATTGGCCTCCGTCTAATTTATTTCAACAACTATTACCTCGTCATTATGCTGAGTTCATATCTTCCTTGCCTTTTAAAGAATATACTGATCCTTTTAAAGGTTCTTTGAACCTTGCTGTGAAGTTGCCGAATTCTTGTGTAAAGCCAGACATGGGGCCAAGAACATATATTGCTTATGGATTTGCTCCGGAGTTTGGACGTGGTGATTCTGTGACTAAGCTACATTGTGATGTGTCTGATGTAGTAAATGTATTGACTCATATTGCTGAAGTGGAATTGAAGTCTGATAGCATTGAAGCCATTAAGAAACAAACTCAAAAGCACCTCAAGCAAGACAAAAGGGACCTACATCTATATGGTGATAATCAAGATGGAGAGACTAATGTTGGCATGCTTGATAATTTATTGTCTTGCGGGGATTCTTTAGATGGTGCTCTCTGGGATATTTTTCGGAGAGAAGATGTACCAAAATTGGAGGAATATCTAAAGAAGCATTTTAGAGAGTTTAGGCATGTACATTGCTCTCCTTTAAAGCAGGTTGTTCACCCTATCCATGATCAGACATTTTATTTGACTATCGAGCATAAGAAGAGGCTTAAGGAAGAGTATGGAATTGAGCCTTGGACTTTTGTTCAGAGGCTAGGAGATGCTGTTTTTGTTCCAGCTGGTTGTCCACACCAGGTTCGAAATTTGAAGTCATGCACAAAGGTTGCACTTGATTTTGTGTCTCCTGAGAATGTTGGTGAGTGCCTTCGTTTGACGGAGGAATTCCGCAAACTTCCTATAAATCACAGGTCCACAGAGGACAAATTGGAGGTGAAGAAAATGGTTGTATATGCCATGCTTGATCTTGTCAAAAAGTTGGAGGAAGCAAGGTCTGGAGAAACCAAGGTTTCAGAGTAA 2355 0.4076 MILPRKNLNKNGDKPSGDSVSVEIIGKRGSKRKTVVSSSSEEDDENDRAKINNAPAKSFAEIQRMIEEIDGEDEVTSGCSVSVKVAGEGENRGKRKLKCIESQAPQFNKKRNSKGIEEESTTCHQCKRNDKGRVVRCTNCKRRRFCILCLTKWYPKLKESDVAEACPVCRDNCNCIACLRSSKLINEMKGTTKSKTGKDEEEFLKYLLKKLLPCLRQLDEEQMLEKEREANRQGLSISKLKIKVADCLKDDRVYCDNCKTSIFDFHRTCTKCSFDLCVRCCYETRECSRSGWSANGDGSIPCPKGNNECNHGFLELRRLLPPNGISKLLRKAEELAEAYKLQEAEEAVDNRCSCLKPVRNAGDIHNNKRKAAFREDSNDNFLYCPRAVDVHHEGLRHFQCHWSKGEPVIVSNVLECSSGLSWEPLVMSRAFRQKTKSKQDAILNVKAVNCLDWCEGDINIHQFFNGYINGLKDRSDWPQVLKLKDWPPSNLFQQLLPRHYAEFISSLPFKEYTDPFKGSLNLAVKLPNSCVKPDMGPRTYIAYGFAPEFGRGDSVTKLHCDVSDVVNVLTHIAEVELKSDSIEAIKKQTQKHLKQDKRDLHLYGDNQDGETNVGMLDNLLSCGDSLDGALWDIFRREDVPKLEEYLKKHFREFRHVHCSPLKQVVHPIHDQTFYLTIEHKKRLKEEYGIEPWTFVQRLGDAVFVPAGCPHQVRNLKSCTKVALDFVSPENVGECLRLTEEFRKLPINHRSTEDKLEVKKMVVYAMLDLVKKLEEARSGETKVSE 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06211 784 MobiDBLite consensus disorder prediction 25 51 - -
Trre1g06211 784 SMART cupin_9 496 742 IPR003347 -
Trre1g06211 784 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 286 777 IPR045109 GO:0032454|GO:0033169
Trre1g06211 784 MobiDBLite consensus disorder prediction 1 54 - -
Trre1g06211 784 ProSiteProfiles Zinc finger RING-type profile. 123 170 IPR001841 -
Trre1g06211 784 FunFam Transcription factor jumonji domain-containing protein 379 751 - -
Trre1g06211 784 ProSiteProfiles JmjC domain profile. 515 742 IPR003347 -
Trre1g06211 784 Pfam JmjC domain, hydroxylase 629 725 IPR003347 -
Trre1g06211 784 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 118 185 IPR018866 -
Trre1g06211 784 SUPERFAMILY Clavaminate synthase-like 394 762 - -
Trre1g06211 784 Coils Coil 325 345 - -
Trre1g06211 784 Gene3D Cupin 381 751 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06211 Trre-Chr1 65785602 65790214 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre1g06211 JmjC 8.5e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06211 K15601 - csav:115721711 800.045