Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06210 ATGGCCAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGGATTCACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCTGGCTTCATGGAAAATCACAAAGGGACGACGTGCTATCCGGCGTAGGCCAAGGAAAAATTTAAATAAAAACGGCGACAAACCATCCGGAGACTCTGTTTCGGTCGAAATTATCGGCAAGCGGGGTAGCAAGAGGAAAACTGTCGTTAGTAGTTCTTCTGAAGAAGACGATGAAAATGATCGTGCTAAAATCAACAACGCTCCAGCGAAGAGTTTTGCAGAAATTCAAAGGATGATCGAAGAAATTGACGGTGAAGATGAAGTAACATCGGGATGCTCTGTTTCAGTTAAAGTTGCAGGAGAGGGAGAAAATCGTGGGAAAAGAAAACTCAAATGCATTGAATCTCAGGCACCACAATTCAACAAGAAGAGAAATTCTAAGGGGATTGAAGAGGAGTCCACAACGTGCCATCAATGTAAGAGAAATGATAAGGGCAGGGTTGTCAGATGCACAAATTGCAAAAGGAGAAGATTTTGCATACTTTGTTTAACTAAATGGTATCCTAAGTTAAAAGAGAGTGATGTTGCTGAGGCGTGTCCAGTATGCCGTGATAATTGCAATTGCATAGCATGCTTGCGATCTTCCAAACTCATCAATGAAATGAAGGGTACAACTAAAAGTAAAACCGGCAAGGACGAGGAGGAGTTCTTGAAGTATCTGCTGAAAAAACTTCTTCCATGTTTAAGACAATTGGATGAAGAACAGATGCTTGAGAAGGAAAGAGAAGCCAATAGACAAGGACTCTCAATCTCGAAGCTTAAAATTAAAGTGGCAGATTGCCTTAAAGATGACCGCGTGTACTGTGACAATTGCAAAACGTCAATATTTGACTTCCACAGAACATGTACAAAGTGTTCTTTCGACCTTTGTGTCCGTTGTTGCTACGAGACTCGTGAGTGTTCAAGATCGGGGTGGAGTGCAAATGGAGATGGTAGCATTCCCTGCCCGAAAGGGAATAATGAATGCAATCACGGTTTCCTAGAACTGAGAAGGCTACTACCTCCAAACGGCATCTCTAAGTTATTACGCAAAGCAGAAGAACTTGCAGAAGCATATAAGCTTCAAGAGGCAGAGGAGGCTGTTGATAATAGGTGTTCATGCTTGAAGCCAGTTAGGAACGCCGGTGATATACACAATAACAAAAGGAAGGCTGCTTTTCGTGAAGATTCCAATGACAACTTTTTATATTGTCCTAGAGCTGTAGATGTACATCATGAAGGTTTAAGACATTTTCAGTGCCATTGGAGCAAAGGGGAGCCTGTAATTGTCAGCAATGTACTCGAATGTTCATCTGGTTTAAGTTGGGAACCACTGGTCATGAGTCGTGCATTCCGTCAAAAAACCAAGTCCAAGCAAGATGCAATTTTGAATGTGAAGGCAGTTAATTGCTTAGATTGGTGCGAGGGAGATATTAATATCCATCAATTCTTTAACGGGTACATAAATGGTCTCAAGGATCGGAGTGATTGGCCTCAGGTGTTGAAATTAAAAGATTGGCCTCCGTCTAATTTATTTCAACAACTATTACCTCGTCATTATGCTGAGTTCATATCTTCCTTGCCTTTTAAAGAATATACTGATCCTTTTAAAGGTTCTTTGAACCTTGCTGTGAAGTTGCCGAATTCTTGTGTAAAGCCAGACATGGGGCCAAGAACATATATTGCTTATGGATTTGCTCCGGAGTTTGGACGTGGTGATTCTGTGACTAAGCTACATTGTGATGTGTCTGATGTAGTAAATGTATTGACTCATATTGCTGAAGTGGAATTGAAGTCTGATAGCATTGAAGCCATTAAGAAACAAACTCAAAAGCACCTCAAGCAAGACAAAAGGGACCTACATCTATATGGTGATAATCAAGATGGAGAGACTAATGTTGGCATGCTTGATAATTTATTGTCTTGCGGGGATTCTTTAGATGGTGCTCTCTGGGATATTTTTCGGAGAGAAGATGTACCAAAATTGGAGGAATATCTAAAGAAGCATTTTAGAGAGTTTAGGCATGTACATTGCTCTCCTTTAAAGCAGGTTGTTCACCCTATCCATGATCAGACATTTTATTTGACTATCGAGCATAAGAAGAGGCTTAAGGAAGAGTATGGAATTGAGCCTTGGACTTTTGTTCAGAGGCTAGGAGATGCTGTTTTTGTTCCAGCTGGTTGTCCACACCAGGTTCGAAATTTGAAGTCATGCACAAAGGTTGCACTTGATTTTGTGTCTCCTGAGAATGTTGGTGAGTGCCTTCGTTTGACGGAGGAATTCCGCAAACTTCCTATAAATCACAGGTCCACAGAGGACAAATTGGAGGTGAAGAAAATGGTTGTATATGCCATGCTTGATCTTGTCAAAAAGTTGGAGGAAGCAAGGTCTGGAGAAACCAAGGTTTCAGAGTAA 2484 0.4179 MASSHSVTGGVYKARERIHRRMADRRLLAILASWKITKGRRAIRRRPRKNLNKNGDKPSGDSVSVEIIGKRGSKRKTVVSSSSEEDDENDRAKINNAPAKSFAEIQRMIEEIDGEDEVTSGCSVSVKVAGEGENRGKRKLKCIESQAPQFNKKRNSKGIEEESTTCHQCKRNDKGRVVRCTNCKRRRFCILCLTKWYPKLKESDVAEACPVCRDNCNCIACLRSSKLINEMKGTTKSKTGKDEEEFLKYLLKKLLPCLRQLDEEQMLEKEREANRQGLSISKLKIKVADCLKDDRVYCDNCKTSIFDFHRTCTKCSFDLCVRCCYETRECSRSGWSANGDGSIPCPKGNNECNHGFLELRRLLPPNGISKLLRKAEELAEAYKLQEAEEAVDNRCSCLKPVRNAGDIHNNKRKAAFREDSNDNFLYCPRAVDVHHEGLRHFQCHWSKGEPVIVSNVLECSSGLSWEPLVMSRAFRQKTKSKQDAILNVKAVNCLDWCEGDINIHQFFNGYINGLKDRSDWPQVLKLKDWPPSNLFQQLLPRHYAEFISSLPFKEYTDPFKGSLNLAVKLPNSCVKPDMGPRTYIAYGFAPEFGRGDSVTKLHCDVSDVVNVLTHIAEVELKSDSIEAIKKQTQKHLKQDKRDLHLYGDNQDGETNVGMLDNLLSCGDSLDGALWDIFRREDVPKLEEYLKKHFREFRHVHCSPLKQVVHPIHDQTFYLTIEHKKRLKEEYGIEPWTFVQRLGDAVFVPAGCPHQVRNLKSCTKVALDFVSPENVGECLRLTEEFRKLPINHRSTEDKLEVKKMVVYAMLDLVKKLEEARSGETKVSE 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06210 827 Pfam JmjC domain, hydroxylase 672 768 IPR003347 -
Trre1g06210 827 SUPERFAMILY Clavaminate synthase-like 437 805 - -
Trre1g06210 827 MobiDBLite consensus disorder prediction 43 95 - -
Trre1g06210 827 FunFam Transcription factor jumonji domain-containing protein 422 794 - -
Trre1g06210 827 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 328 820 IPR045109 GO:0032454|GO:0033169
Trre1g06210 827 SMART cupin_9 539 785 IPR003347 -
Trre1g06210 827 AntiFam Antisense to 16S rRNA 2 21 - -
Trre1g06210 827 ProSiteProfiles Zinc finger RING-type profile. 166 213 IPR001841 -
Trre1g06210 827 Gene3D Cupin 424 794 - -
Trre1g06210 827 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 161 228 IPR018866 -
Trre1g06210 827 ProSiteProfiles JmjC domain profile. 558 785 IPR003347 -
Trre1g06210 827 MobiDBLite consensus disorder prediction 68 94 - -
Trre1g06210 827 Coils Coil 368 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06210 Trre-Chr1 65784522 65790214 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre1g06210 JmjC 9.2e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06210 K15601 - csav:115721711 803.127