Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06204 ATGGTGACGGTGGCGATGGAAGACAACGAAAGCTGCGGCAGCGGAGTACACCACCGCACGTCGTCTTCTTCATCAATTCCCGGACAAAGTCGGCATCACCGCCAGAAACTCGAAGTGTACAATGAGATTCTCCGTCGCCTTAATGATTCCGGCAACGAAGAAGCTATGCAACCTGGCTTCAGCGATCAGCTTTGGGCTCACTTCAACCGTCTTCCTTCACGGTATGCTTTAGATGTGAATGTGGAAAGAGCGGAAGATGTTCTTATGCATAAGAGATTACTACATTTAGCACATGATCCTGCGAATAGGCCTCAAATTGAAATTCGCTTAGTTCAGCTTCATTCCTCATCTGATGAAAACACAGCCGACTCTTCCCAATCTTATGCTCCTGGCGAAGATTCTGTTCAAAGCTCTTCAAAGTACTCAAGCAGACAGGGTATACACCCACCTCCTGCTTTTGGTTCTTCTCCTAATCTTGAAGCACTGGCTCTTGAAGAAAATGATTCCGATGACTTAGAAGAGGAGCGATCTCTGCATGCCAGTGTACAATATACACGGCCCATGCATGAAATCACCTTCTCAACAGATGACAAGCCAAAGCTTCTCAGCCAGTTAACTGCTTTGCTTGCTGAGGTTGGACTGAACATCCAAGAGGCACATGCTTTTTCCACAACTGATGGTTACTCGTTAGATGTGTTTGTTGTTGAAGGATGGCCCTACGAGGAAACAGAGAAGCTAAAAGAAACTTTGGAAAAAGAAGTCTTGAAGATAGAGAAGAGACATGATAGATCCAGTCAGCAATCAATAGCATCTGTTGATGAACGTGATCAAGCAAGGATGAAAAATGAACTGGATCATTTGACAATTCCAAATGATGGGACAGATGTTTGGGAAATAGATCCTAAACATTTGAAATATGGAACTCAAATTGCATCTGCGTCATATGGTGAACTATTTAAAGGTACGTATTGTAGCCAGGAAGTAGCCATCAAAGTTCTCAAGGCTGAGCATGTAAGTTCAGAAATGCAGAAAGAGTTTGCTCAGGAAGTCTACATCATGAGAAAGGTTCGACACAAGAATGTTGTGCAATTCATGGGAGCATGTACCAAGCCCCCACGCTTATGCATAGTTACAGAGTTTATGTCTGGTGGAAGTGTGTATGACTACCTACATAAGCAGAAAGGGTTTTTCAAATTTCCTACCCTGCTCAAAGTTGCAATTGATGTTTCTAAAGGAATGAACTACTTGCACCAACATAACATAATCCACAGAGACTTGAAGACGGCCAATCTTTTGATGGATGAAAACGGTGTTGTAAAGGTCGCTGATTTTGGGGTTGCTAGAGTGAAAACTCAGTCCGGAGTTATGACAGCAGAAACTGGGACATATCGTTGGATGGCACCTGAGGTTATAGAACACAAGCCATATGATCACAAGGCTGATGTATTTAGTTTTGGAGTTGTTTTATGGGAGTTGCTCACTGGAAAGCTTCCGTACGAATATTTGACCCCTCTACAGGCAGCTATAGGAGTTGTTCAGAAGGGTTTACGGCCCACCATCCCCAAGAGCACTAATACAAAGTTTGTTCAAATTCTTGAGAGGTCTTGGCAGCAAGATCCAACTTTAAGACCTGATTTCTCTGAAATTATAGAGATCCTGCAGCAGTTGGCTAAGGAGGTTGGAGATGAAGGAGAGGGGCGCAAAGACAAATCTGGAGGATTTCTGTCTGTCCTCAGACGAGGTCATCACTAA 1752 0.4366 MVTVAMEDNESCGSGVHHRTSSSSSIPGQSRHHRQKLEVYNEILRRLNDSGNEEAMQPGFSDQLWAHFNRLPSRYALDVNVERAEDVLMHKRLLHLAHDPANRPQIEIRLVQLHSSSDENTADSSQSYAPGEDSVQSSSKYSSRQGIHPPPAFGSSPNLEALALEENDSDDLEEERSLHASVQYTRPMHEITFSTDDKPKLLSQLTALLAEVGLNIQEAHAFSTTDGYSLDVFVVEGWPYEETEKLKETLEKEVLKIEKRHDRSSQQSIASVDERDQARMKNELDHLTIPNDGTDVWEIDPKHLKYGTQIASASYGELFKGTYCSQEVAIKVLKAEHVSSEMQKEFAQEVYIMRKVRHKNVVQFMGACTKPPRLCIVTEFMSGGSVYDYLHKQKGFFKFPTLLKVAIDVSKGMNYLHQHNIIHRDLKTANLLMDENGVVKVADFGVARVKTQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGVVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKSTNTKFVQILERSWQQDPTLRPDFSEIIEILQQLAKEVGDEGEGRKDKSGGFLSVLRRGHH 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06204 583 MobiDBLite consensus disorder prediction 561 583 - -
Trre1g06204 583 Gene3D - 188 260 - -
Trre1g06204 583 ProSiteProfiles ACT domain profile. 190 266 IPR002912 -
Trre1g06204 583 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 98 560 - -
Trre1g06204 583 SUPERFAMILY ACT-like 187 252 IPR045865 -
Trre1g06204 583 CDD ACT_TyrKc 188 255 - -
Trre1g06204 583 FunFam Serine/threonine-protein kinase isoform 1 294 382 - -
Trre1g06204 583 MobiDBLite consensus disorder prediction 561 576 - -
Trre1g06204 583 Coils Coil 240 267 - -
Trre1g06204 583 Gene3D Transferase(Phosphotransferase) domain 1 383 571 - -
Trre1g06204 583 MobiDBLite consensus disorder prediction 117 157 - -
Trre1g06204 583 MobiDBLite consensus disorder prediction 1 34 - -
Trre1g06204 583 ProSiteProfiles Protein kinase domain profile. 304 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g06204 583 PRINTS Tyrosine kinase catalytic domain signature 461 471 IPR001245 GO:0004672|GO:0006468
Trre1g06204 583 PRINTS Tyrosine kinase catalytic domain signature 480 502 IPR001245 GO:0004672|GO:0006468
Trre1g06204 583 PRINTS Tyrosine kinase catalytic domain signature 415 433 IPR001245 GO:0004672|GO:0006468
Trre1g06204 583 PRINTS Tyrosine kinase catalytic domain signature 524 546 IPR001245 GO:0004672|GO:0006468
Trre1g06204 583 PRINTS Tyrosine kinase catalytic domain signature 378 391 IPR001245 GO:0004672|GO:0006468
Trre1g06204 583 SMART serkin_6 304 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g06204 583 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Trre1g06204 583 CDD STKc_MAP3K-like 310 553 - -
Trre1g06204 583 MobiDBLite consensus disorder prediction 117 145 - -
Trre1g06204 583 MobiDBLite consensus disorder prediction 15 30 - -
Trre1g06204 583 FunFam serine/threonine-protein kinase HT1 383 572 - -
Trre1g06204 583 Gene3D Phosphorylase Kinase; domain 1 294 382 - -
Trre1g06204 583 SUPERFAMILY Protein kinase-like (PK-like) 290 553 IPR011009 -
Trre1g06204 583 Pfam Protein tyrosine and serine/threonine kinase 304 553 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06204 Trre-Chr1 65748265 65755704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06204 2 582 MAP Kinase Kinase Kinase AT4G35780 63.932 0.0 737
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Trre1g06204 PK_Tyr_Ser-Thr 2.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06204 - - gmx:100805180 952.584