Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06203 ATGCAATCTATTAGAAAATCATTCAAATCTTATGCTTCTTACAACAAAAAAAATTCTACTAGGTTTTCAGACCCAGATTCCGACCACCACGAACAACTCCCTATCCTCCACGACGAAGAACACCACCGTCAACCTTCTCCCATGGCCGGAGACGTCGTCGTGAAGATTGACGACGCCGGTGAACCTTCTCGAGAGAATAAGATTTGGAGAGAGTCCAGCTATGATTTCTGGAATGATACCGGCGACAATGTTCGTGATGATGATAGTTTTGATTTCCGGAATAAAATTAATCAGGAGGATCCACCGTCACAGCTAATCGGAAAGTTTTTGCATAAACAGAAAGCTTCTGGTGAGATGTCGTTGGATATGGATTTGGAGATGGAGGAGTTTCAGAATGAAGGTGATAGCGATGGAAAGTTAACGCCGGTGGAGGAATCTCCGACGATGATACAACGTGAGCTTAAGGTTTCGTTTGAGGAACCAACTTCGAATGTAATTGAAGCCGTTAATGGTCCTGTGAGAAGAAGAAACAGCAAGGATTCACCTTCCATGGCTGAGTATGCTAATGCTAGACCTCCATTTCCGCCTAATCATGACAATCGTCGTTCTCCGTCACCGGCCCCGGCCGGAACCGATTATGAGGTTATAAGGTGTACCTCTAATGCTTCTTTTGAAAGGAACCTTTCCATGCAGAGAAAATCAACGCTATTGAAAACCAAAACTAAGTCCAGATTAATGGACCCGCCAGATGAACCTGTGGTGGATAGAAGATCGGGCCGGGTTGCTAAATCGGGTCAGATTTTGTCCGGGTTTATTGGGAAGAAAGGTGATGAGGAGGAAGATGATCCATTTATGGAAGAGGATTTTCCAGATGAGTATAAGAAAACACAATTTAGTCTTTGGATTCTTCTTGAATGGTTGAGTTTGATTTTGATTATTGGGGCATTAGTAACAACTTTGAGTGTTCCTTTATTGAGAGAGAAGAATTTGTGGCAACTCTTGTTATGGAAATGGGAGGTAATGATTCTTGTTCTAATATGTGGTAGATTGGTTTCTGGTTGGTTTATTAGAATCGCCGTGTTTTGTATCGAAAGAAATTTTCTATTGAGAAAAAGGGTACTTTACTTTGTGTATGGTGTGAAGAAAGCTGTGCAAAATTGTGTTTGGTTGGGACTTGTTTTAATTGCATGGCATTTTCTCTTTGATGAGAGAGTTCAAAGAGAGACAAAAAGTGATTTTCTTCAATATGTCACCAAGGTTTTGGTTTGTTTCTTGGTGGGTACTTTGGTGTGGTTGTTGAAAACTTTAATGGTTAAGGTTTTAGCTTCTTCTTTTCATGTCAGTACATATTTTGATAGAATTCAAGACTCACTGTTTAATCAATTCGTAATCGAAACACTTTCGGGGCCACCTTTGGTGGAAATTCGAAAGGCTGAAGAGGAAGAGGAAAGACTTGCTGACGAGGTTCAAAAGTTGCAGAATGCTGGGGTTACCATTCCTGCTGATCTTAGAGATTCTGCATTTCCTACAAAGAGTGGAAGGTCAAAGAGTGGTATGCTTCCGAAAAGCCCTGTTGTTAAAAGTGCCAGGTTTTCAAGGCCACTTTCGAAGAAATCGGATGATGGAATCGGGAATGGTGGTGGGATAACTATTGATCACTTACATAAGCTGAATCCAAATAATGTGTCTGCTTGGAATATGAAAAGGTTGATGAATATGGTTCGGCACGGGGCACTTACTACATTGGATGAACAAATACTTGATTCCACTGCTGATGATGAGCATGCCACACAAATCAGAAGTGAAAATGAGGCTAAAGCAGCTGCTAAGAAAATCTTTCAGAATGTTGCTAGGCGCGGCTGCAGGTTTATACACCCTGAGGATTTGATGCGTTTTATGCGAGAAGATGAAGCTATAAAAACCATAAGTCTCTTTGAAGGAGCGTTAGATACTGGGAGAATCAGTAAATCCGCCTTGAAAAATTGGGTGGTGAATGCCTTCAGGGAGAGGAGAGCACTTGCTTTGACATTGAATGACACCAAAACAGCAGTGAACAAACTTCATCGAATGCTCAATTTTTTAGTTGCCATTATCATACTGGTTATTTGGCTCTTGATATTGGAAATTGCCACCTCCAAATTTCTTCTTTTTGTGAGCTCACAACTTGTCTTGGTTGCATTTATATTTGGAAACACCTGCAAAACCGTATTTGAAGCAATCATATTCTTATTTGTCATGCACCCGTTCGATGTGGGAGATAGATGTGAGATTGATGCAACCCAGATGGTTGTAGAAGAAATGAACATATTGACTACCGTATTTCTTAGATTCGATAATCAAAAGATAACGATTCCTAATGCTGTTCTTGCTACTAAGGCCATACATAATTTCTACCGTAGTCCTGACATGGGAGATTCTGTTGAATTCCTTATTCATGTAGCTACCCCTGCTGAAAAGATTTCACTCATAAAACACAGAATAAATAGTTTCGTTGATAACAAGAAGGAGCATTGGTATCCTTCACCTTTTATAGTATTGAAGGATCACGAACAATTGGACATGGTGAGAATGGCGATTTGGCCAACTCACAGAATGAACTTCCAAGACATGGGAGAAAGATTTATCAGGAGGTCTCTTCTTGTTGAAGAGTTGATGAAGATTTTCAAAGATCTTGACATTCAATACCGTCTCATGCCTCTCGACATTAACGTTAGAGCTGTGCCCACCACTTCTGAACGTCTTCCACCTAGTTGGTCAGCATTCACAAATTGA 2772 0.4062 MQSIRKSFKSYASYNKKNSTRFSDPDSDHHEQLPILHDEEHHRQPSPMAGDVVVKIDDAGEPSRENKIWRESSYDFWNDTGDNVRDDDSFDFRNKINQEDPPSQLIGKFLHKQKASGEMSLDMDLEMEEFQNEGDSDGKLTPVEESPTMIQRELKVSFEEPTSNVIEAVNGPVRRRNSKDSPSMAEYANARPPFPPNHDNRRSPSPAPAGTDYEVIRCTSNASFERNLSMQRKSTLLKTKTKSRLMDPPDEPVVDRRSGRVAKSGQILSGFIGKKGDEEEDDPFMEEDFPDEYKKTQFSLWILLEWLSLILIIGALVTTLSVPLLREKNLWQLLLWKWEVMILVLICGRLVSGWFIRIAVFCIERNFLLRKRVLYFVYGVKKAVQNCVWLGLVLIAWHFLFDERVQRETKSDFLQYVTKVLVCFLVGTLVWLLKTLMVKVLASSFHVSTYFDRIQDSLFNQFVIETLSGPPLVEIRKAEEEEERLADEVQKLQNAGVTIPADLRDSAFPTKSGRSKSGMLPKSPVVKSARFSRPLSKKSDDGIGNGGGITIDHLHKLNPNNVSAWNMKRLMNMVRHGALTTLDEQILDSTADDEHATQIRSENEAKAAAKKIFQNVARRGCRFIHPEDLMRFMREDEAIKTISLFEGALDTGRISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFLVAIIILVIWLLILEIATSKFLLFVSSQLVLVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDATQMVVEEMNILTTVFLRFDNQKITIPNAVLATKAIHNFYRSPDMGDSVEFLIHVATPAEKISLIKHRINSFVDNKKEHWYPSPFIVLKDHEQLDMVRMAIWPTHRMNFQDMGERFIRRSLLVEELMKIFKDLDIQYRLMPLDINVRAVPTTSERLPPSWSAFTN 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06203 923 MobiDBLite consensus disorder prediction 15 67 - -
Trre1g06203 923 Coils Coil 475 495 - -
Trre1g06203 923 SUPERFAMILY Sm-like ribonucleoproteins 738 797 IPR010920 -
Trre1g06203 923 PIRSF Memb_At2g17000 23 921 IPR016688 -
Trre1g06203 923 Gene3D - 748 797 IPR023408 -
Trre1g06203 923 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 28 918 IPR016688 -
Trre1g06203 923 FunFam Predicted mechanosensitive ion channel 748 797 - -
Trre1g06203 923 MobiDBLite consensus disorder prediction 21 46 - -
Trre1g06203 923 MobiDBLite consensus disorder prediction 167 213 - -
Trre1g06203 923 Pfam Mechanosensitive ion channel 690 893 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06203 Trre-Chr1 65739637 65744362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06203 51 920 Mechanosensitive Ion Channel Family AT1G78610 58.206 0.0 953
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06203 K22048 - gmx:100789882 1365.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06203 1 65739637 65744362 Trre1g06203 1 65739637 65744362 ECH