Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06166 ATGGAATTTGATGAATATGAATACTTAGAGAAAACAGTTAATAATTCTGAACTTAAGAATGAGAATGAAACCACTAATGGTGGTGGGGATAGGACTGTTAAATCTGAAGATAGAGTCCGTAGTCGTAGCTCCAAGCGTAGGGATAGTGAGAAGGATGATGGTTATCGTAGTGGTTATGATAGGCGGAAAGAAAGAGGCTCGTCTCGTAATCGTTCACGGTCTAGAGATGGAGACAAGGAGAAGGATAAGCAGAGAAGCTCTCAGGGTAATGGGGATAGGAGGAGAGATAGGGATAGAGACAGTGGAGACAAGTATAAAAGGGAGAGAGAAAGAGACAGGGACGTTGAAAGAGACAGAAGGAATCGAGGGAGTGAGAGTGAAAGAGAGAAAGAGCGTTCTCAGCGAAGCAGAAGTAGATCCGAAAGGCATCGAAGTGATTTGGATAATGGCGACAGAGAGAGAAGTCGTGATAGGGAATATAGAGACAGAGAAAGAAACCGAGATAAGGATTATGGAGACAGAGGAATGACAAGGGACGCAAAGGAACCGGATAGAGAAAACAGAAGGCATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGATTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTTAAAGCGGATGAGAGAGACGTTTATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAAGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCCGGTCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCTACAGCATCTGTTGCCGGTGGACCTAATGGAAATTTAGGCCCTTATTCTGGGGGTGCAAGAAGGCTCTATGTTGGCAATCTGCATTCCAGTATTACTGAAGCTGATCTACGTAGGGTGTTTGAAGCTTTTGGTCAAGTTGAGCTAGTCCAGCTGCCTCTTGATGACATTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCCCGCCTTGAAGATGCAAAAAATGCTCAGAGCTTGAATAGCCAATTGGAGATTGGTGGCAGGACAATCAAGGTATCGGCGGTTACTGATCAATCTGGAATGCAAGAATTCGGCGGAAATACTGGTGATATGGATGATGATGAAGGTGGTGGCATGTCCTTGAATGCCTCTTCCCGAGCGTTACTCATGCAGAAGTTGGATCGCAGTGGCAATGCATCAAGTATGATTGGTTTGCTGGGCAATTCTGCTGTCAACAGTACAGGTCTTAATCTACAAGCAACGGGAAACATACCAGCAACAACTCTTCTAGGAGCCGCACCAGTGGGTTCACTTTCTATTCCTGTATTAGCTGGACTGCCAAGTGGAGGTCTCCAAATTCCAATGCCGACAAGTCCTTCTATTGATACAATTGGTGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCCGAAAATGAGAAAGACCCAGACTTTGATTTGGATGTTAAAGAAGATGTTTTAGCAGAATGCTCTAAGTTTGGGAACTTAAGACATTTATGTGTTGATAAGAAGAGTGCTGGATTTGTCTACTTACGATTTGAAAATACCGAATCTGCAATAAGTGCACAGCGGGCCTTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTGCCCCAGTCATACGAAGATAGATTCCCCCTCAAATAG 1788 0.4385 MEFDEYEYLEKTVNNSELKNENETTNGGGDRTVKSEDRVRSRSSKRRDSEKDDGYRSGYDRRKERGSSRNRSRSRDGDKEKDKQRSSQGNGDRRRDRDRDSGDKYKRERERDRDVERDRRNRGSESEREKERSQRSRSRSERHRSDLDNGDRERSRDREYRDRERNRDKDYGDRGMTRDAKEPDRENRRHKEKKEEAAEPEIDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTASVAGGPNGNLGPYSGGARRLYVGNLHSSITEADLRRVFEAFGQVELVQLPLDDIGHCKGFGFVQFARLEDAKNAQSLNSQLEIGGRTIKVSAVTDQSGMQEFGGNTGDMDDDEGGGMSLNASSRALLMQKLDRSGNASSMIGLLGNSAVNSTGLNLQATGNIPATTLLGAAPVGSLSIPVLAGLPSGGLQIPMPTSPSIDTIGVPSECLLLKNMFDPENEKDPDFDLDVKEDVLAECSKFGNLRHLCVDKKSAGFVYLRFENTESAISAQRALHGRWFAGKMITASFMVPQSYEDRFPLK 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06166 595 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 502 585 IPR000504 GO:0003723
Trre1g06166 595 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 404 520 IPR029123 -
Trre1g06166 595 CDD RRM1_RBM39_like 210 282 - -
Trre1g06166 595 MobiDBLite consensus disorder prediction 1 17 - -
Trre1g06166 595 SMART rrm1_1 210 282 IPR000504 GO:0003723
Trre1g06166 595 SMART rrm1_1 314 386 IPR000504 GO:0003723
Trre1g06166 595 SMART rrm1_1 503 581 IPR000504 GO:0003723
Trre1g06166 595 SMART rrm2_1 314 386 IPR003954 GO:0003676
Trre1g06166 595 SMART rrm2_1 503 581 IPR003954 GO:0003676
Trre1g06166 595 Gene3D - 173 311 IPR012677 -
Trre1g06166 595 Gene3D - 312 418 IPR012677 -
Trre1g06166 595 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Trre1g06166 595 SUPERFAMILY RNA-binding domain, RBD 205 311 IPR035979 GO:0003676
Trre1g06166 595 NCBIfam splicing factor, CC1-like family 92 592 IPR006509 GO:0003723|GO:0005634|GO:0006397
Trre1g06166 595 FunFam CC1-like, splicing factor 308 416 - -
Trre1g06166 595 FunFam RNA-binding protein 39 isoform X1 202 294 - -
Trre1g06166 595 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 526 578 IPR000504 GO:0003723
Trre1g06166 595 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 278 IPR000504 GO:0003723
Trre1g06166 595 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 384 IPR000504 GO:0003723
Trre1g06166 595 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Trre1g06166 595 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 593 IPR006509 GO:0003723|GO:0005634|GO:0006397
Trre1g06166 595 MobiDBLite consensus disorder prediction 30 203 - -
Trre1g06166 595 MobiDBLite consensus disorder prediction 1 203 - -
Trre1g06166 595 Gene3D - 497 595 IPR012677 -
Trre1g06166 595 CDD RRM3_RBM39_like 501 583 - -
Trre1g06166 595 SUPERFAMILY RNA-binding domain, RBD 313 589 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06166 Trre-Chr1 65492548 65501005 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06166 210 376 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 6.81e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06166 K13091 - gmx:100789839 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06166 1 65492548 65501005 Trre1g06166 1 65492548 65501005 ECH