Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06165 ATGATGGAATTTGATGAATATGAATACTTAGAGAAAACAGTTAATAATTCTGAACTTAAGAATGAGAATGAAACCACTAATGGTGGTGGGGATAGGACTGTTAAATCTGAAGATAGAGTCCGTAGTCGTAGCTCCAAGCGTAGGGATAGTGAGAAGGATGATGGTTATCGTAGTGGTTATGATAGGCGGAAAGAAAGAGGCTCGTCTCGTAATCGTTCACGGTCTAGAGATGGAGACAAGGAGAAGGATAAGCAGAGAAGCTCTCAGGGTAATGGGGATAGGAGGAGAGATAGGGATAGAGACAGTGGAGACAAGTATAAAAGGGAGAGAGAAAGAGACAGGGACGTTGAAAGAGACAGAAGGAATCGAGGGAGTGAGAGTGAAAGAGAGAAAGAGCGTTCTCAGCGAAGCAGAAGTAGATCCGAAAGGCATCGAAGTGATTTGGATAATGGCGACAGAGAGAGAAGTCGTGATAGGGAATATAGAGACAGAGAAAGAAACCGAGATAAGGATTATGGAGACAGAGGAATGACAAGGGACGCAAAGGAACCGGATAGAGAAAACAGAAGGCATAAAGAGAAAAAGGAAGAAGCAGCAGAACCTGAGATTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCTTATCAGATTTCTCTTAAAGCGGATGAGAGAGACGTTTATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAAGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCCGGTCAACCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCTACAGCATCTGTTGCCGGTGGACCTAATGGAAATTTAGGCCCTTATTCTGGGGGTGCAAGAAGGCTCTATGTTGGCAATCTGCATTCCAGTATTACTGAAGCTGATCTACGTAGGGTGTTTGAAGCTTTTGGTCAAGTTGAGCTAGTCCAGCTGCCTCTTGATGACATTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCCCGCCTTGAAGATGCAAAAAATGCTCAGAGCTTGAATAGCCAATTGGAGATTGGTGGCAGGACAATCAAGGTATCGGCGGTTACTGATCAATCTGGAATGCAAGAATTCGGCGGAAATACTGGTGATATGGATGATGATGAAGGTGGTGGCATGTCCTTGAATGCCTCTTCCCGAGCGTTACTCATGCAGAAGTTGGATCGCAGTGGCAATGCATCAAGTATGATTGGTTTGCTGGGCAATTCTGCTGTCAACAGTACAGGTCTTAATCTACAAGCAACGGGAAACATACCAGCAACAACTCTTCTAGGAGCCGCACCAGTGGGTTCACTTTCTATTCCTGTATTAGCTGGACTGCCAAGTGGAGGTCTCCAAATTCCAATGCCGACAAGTCCTTCTATTGATACAATTGGTGTTCCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCCGAAAATGAGAAAGACCCAGACTTTGATTTGGATGTTAAAGAAGATGTTTTAGCAGAATGCTCTAAGTTTGGGAACTTAAGACATTTATGTGTTGATAAGAAGAGTGCTGGATTTGTCTACTTACGATTTGAAAATACCGAATCTGCAATAAGTGCACAGCGGGCCTTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTGCCCCAGTCATACGAAGATAGATTCCCCCTCAAATAG 1791 0.4383 MMEFDEYEYLEKTVNNSELKNENETTNGGGDRTVKSEDRVRSRSSKRRDSEKDDGYRSGYDRRKERGSSRNRSRSRDGDKEKDKQRSSQGNGDRRRDRDRDSGDKYKRERERDRDVERDRRNRGSESEREKERSQRSRSRSERHRSDLDNGDRERSRDREYRDRERNRDKDYGDRGMTRDAKEPDRENRRHKEKKEEAAEPEIDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTASVAGGPNGNLGPYSGGARRLYVGNLHSSITEADLRRVFEAFGQVELVQLPLDDIGHCKGFGFVQFARLEDAKNAQSLNSQLEIGGRTIKVSAVTDQSGMQEFGGNTGDMDDDEGGGMSLNASSRALLMQKLDRSGNASSMIGLLGNSAVNSTGLNLQATGNIPATTLLGAAPVGSLSIPVLAGLPSGGLQIPMPTSPSIDTIGVPSECLLLKNMFDPENEKDPDFDLDVKEDVLAECSKFGNLRHLCVDKKSAGFVYLRFENTESAISAQRALHGRWFAGKMITASFMVPQSYEDRFPLK 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06165 596 SMART rrm2_1 315 387 IPR003954 GO:0003676
Trre1g06165 596 SMART rrm2_1 504 582 IPR003954 GO:0003676
Trre1g06165 596 Gene3D - 498 596 IPR012677 -
Trre1g06165 596 NCBIfam splicing factor, CC1-like family 93 593 IPR006509 GO:0003723|GO:0005634|GO:0006397
Trre1g06165 596 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 279 IPR000504 GO:0003723
Trre1g06165 596 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 385 IPR000504 GO:0003723
Trre1g06165 596 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 527 579 IPR000504 GO:0003723
Trre1g06165 596 Gene3D - 174 312 IPR012677 -
Trre1g06165 596 Gene3D - 313 419 IPR012677 -
Trre1g06165 596 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 391 IPR000504 GO:0003723
Trre1g06165 596 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 594 IPR006509 GO:0003723|GO:0005634|GO:0006397
Trre1g06165 596 SUPERFAMILY RNA-binding domain, RBD 206 312 IPR035979 GO:0003676
Trre1g06165 596 SMART rrm1_1 211 283 IPR000504 GO:0003723
Trre1g06165 596 SMART rrm1_1 315 387 IPR000504 GO:0003723
Trre1g06165 596 SMART rrm1_1 504 582 IPR000504 GO:0003723
Trre1g06165 596 CDD RRM3_RBM39_like 502 584 - -
Trre1g06165 596 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723
Trre1g06165 596 MobiDBLite consensus disorder prediction 31 205 - -
Trre1g06165 596 MobiDBLite consensus disorder prediction 1 205 - -
Trre1g06165 596 MobiDBLite consensus disorder prediction 1 18 - -
Trre1g06165 596 SUPERFAMILY RNA-binding domain, RBD 314 590 IPR035979 GO:0003676
Trre1g06165 596 CDD RRM1_RBM39_like 211 283 - -
Trre1g06165 596 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 503 586 IPR000504 GO:0003723
Trre1g06165 596 FunFam RNA-binding protein 39 isoform X1 203 295 - -
Trre1g06165 596 FunFam CC1-like, splicing factor 309 417 - -
Trre1g06165 596 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 405 521 IPR029123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06165 Trre-Chr1 65492548 65501008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06165 211 377 Eukaryotic Initiation Factors Gene Family AT4G34110 28.402 6.59e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06165 K13091 - gmx:100789839 730.324