Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06154 ATGCAAAACTTTACTGAGAGATTAAGACCTCTTGTTGGTTTGAATGGTTGGGATTACATTGTCTATTGGAAATTAAGTGATGATCAAAGGTTTCTTGAATGGTTAGGATGTTGTTGTAGTGGAACTGAAAGTAATCAAAATGTTGGAGAAGAACATCTTTTCCCTGTCTCTTCATGTAGGGATACAATATTTTCACATCCAAGAACAAAGTCTTGTGATCTTCTTTCACAACTTTCCACTTCCATACCTACAGATTCAGGGATTCATGCACAAACTTTATTAACAAACCAGCCCAATTGGTTGAACTATCCTAATACCTTGGATCCAAACACTTTACAAGAAACAATTAATGGGACGCATGTTTTGATTCCAGTACCTGGTGGACTAGTTGAGCTCTTTGTAACTAAACAAGTTGGTGAAGATCAACAGATAATAGATTTGGTCACATCTCAATGCATTGCAATGGTGGATCAAGAAGGAATGAACCACTCATTTGGATTCAATTCAATGAGTAACATGCAATCAAATCAAGTTCTAGGTGGTGATGAAAATGATGGAAATAAAACAAACAATCATTTTCATTCATCAGAGACGATGAATCTTCCACATGATATCTCTGTAATGAACTTCATGCAACAGTTTAATTATAGTTATAATCAGCAACAAAACAGAATAAAAAACGACGAAACTTTCTCTGAAGAATACCATGGTTCATTCCTTCATGATCTTGAAAACAATAACGTTCTCAAATCAAACACGGAAGAGGAAAATGATAACAAAAGCTTGATGACAGATAATAATCAATATATGTTTGTTGATCCATTGGACTCAAAAAAGAAACAAGAAAATGGTGTTGGTAGATCAGATTCTATGTCAGATTGTAGTGATCAGAATGAAGAAGAAGATGATGGAAAATATAGGAGAAGGAGTGGAAAAGGAAACCAATCAAAGAACCTTGTTGCAGAGAGAAAAAGAAGGAAGAAACTGAATGATAGATTGTATAATCTTCGTTCTTTGGTTCCGAGAATCTCGAAGCTTGATAGAGCTTCAATTCTTGGTGATGCTATTGAGTTTGTGAAGGATTTGCAGAAACAAGTGAAAGAACTTCAAGATGAACTTGAGGAAAATTCAGACACAGGAACTGAAAGTAACTGCATTGTTAATGGAAATAATAATAATCAATATGTTGGTGGTGTTCAAGTTCAACCAGATAATAATAATGTTGCAAAAGCAGAACATGGATTTCATGTTGGAAATGGCTATGTTTCAAAACAAAAGCAGGAAGATGTTGGTACTGTTACTGACAAGCAGACACAGCAGATGGAGCCACAAGTGGAAGTAGCTCAGATAGATGGAAATGAATACTTTCTGAAGGTGTTCTGTGAGCATAGGCCTGGTGGTTTTGTGAAATTGATGGAAGCTTTCAACACTCTAGGCATGGATGTAGTACATGCCACAGTAACCAGTCACAAGGGTCTTGTCTCAAATGTTTTCAAAGTGGAGAAAAAGGAGAGTGAAATAGTTGAGGCTGAAGATGTAAGAGATTCACTACTAGAGCTGACAAGGAACAGATCTACATCATGTTGGAGTCATGAGATGGCAACATCAACATCATCAGAGAATGGTGTCATCAGTAGGGACCAACATGATCACCAGATTAATGCTGCTGCTGCCTATCATCCACATCAATTTAATACTTAA 1701 0.3633 MQNFTERLRPLVGLNGWDYIVYWKLSDDQRFLEWLGCCCSGTESNQNVGEEHLFPVSSCRDTIFSHPRTKSCDLLSQLSTSIPTDSGIHAQTLLTNQPNWLNYPNTLDPNTLQETINGTHVLIPVPGGLVELFVTKQVGEDQQIIDLVTSQCIAMVDQEGMNHSFGFNSMSNMQSNQVLGGDENDGNKTNNHFHSSETMNLPHDISVMNFMQQFNYSYNQQQNRIKNDETFSEEYHGSFLHDLENNNVLKSNTEEENDNKSLMTDNNQYMFVDPLDSKKKQENGVGRSDSMSDCSDQNEEEDDGKYRRRSGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDTGTESNCIVNGNNNNQYVGGVQVQPDNNNVAKAEHGFHVGNGYVSKQKQEDVGTVTDKQTQQMEPQVEVAQIDGNEYFLKVFCEHRPGGFVKLMEAFNTLGMDVVHATVTSHKGLVSNVFKVEKKESEIVEAEDVRDSLLELTRNRSTSCWSHEMATSTSSENGVISRDQHDHQINAAAAYHPHQFNT 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06154 566 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 362 IPR011598 GO:0046983
Trre1g06154 566 CDD ACT_UUR-ACR-like 457 520 - -
Trre1g06154 566 MobiDBLite consensus disorder prediction 276 324 - -
Trre1g06154 566 Coils Coil 352 379 - -
Trre1g06154 566 CDD bHLH_AtAMS_like 316 386 - -
Trre1g06154 566 Gene3D - 302 378 IPR036638 GO:0046983
Trre1g06154 566 ProSiteProfiles ACT domain profile. 456 527 IPR002912 -
Trre1g06154 566 Pfam Helix-loop-helix DNA-binding domain 320 363 IPR011598 GO:0046983
Trre1g06154 566 SMART finulus 319 368 IPR011598 GO:0046983
Trre1g06154 566 Coils Coil 500 520 - -
Trre1g06154 566 SUPERFAMILY ACT-like 453 522 IPR045865 -
Trre1g06154 566 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 150 IPR025610 -
Trre1g06154 566 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 190 522 - -
Trre1g06154 566 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 316 376 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06154 Trre-Chr1 65422717 65425489 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06154 1 565 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 47.029 1.84e-146 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g06154 bHLH-MYC_N 1.2e-18 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06154 - - psat:127097943 969.148