Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06153 ATGAATAATTTCATCATGCAAAACTTTACTGAGAGATTAAGACCTCTTGTTGGTTTGAATGGTTGGGATTACATTGTCTATTGGAAATTAAGTGATGATCAAAGGTTTCTTGAATGGTTAGGATGTTGTTGTAGTGGAACTGAAAGTAATCAAAATGTTGGAGAAGAACATCTTTTCCCTGTCTCTTCATGTAGGGATACAATATTTTCACATCCAAGAACAAAGTCTTGTGATCTTCTTTCACAACTTTCCACTTCCATACCTACAGATTCAGGGATTCATGCACAAACTTTATTAACAAACCAGCCCAATTGGTTGAACTATCCTAATACCTTGGATCCAAACACTTTACAAGAAACAATTAATGGGACGCATGTTTTGATTCCAGTACCTGGTGGACTAGTTGAGCTCTTTGTAACTAAACAAGTTGGTGAAGATCAACAGATAATAGATTTGGTCACATCTCAATGCATTGCAATGGTGGATCAAGAAGGAATGAACCACTCATTTGGATTCAATTCAATGAGTAACATGCAATCAAATCAAGTTCTAGGTGGTGATGAAAATGATGGAAATAAAACAAACAATCATTTTCATTCATCAGAGACGATGAATCTTCCACATGATATCTCTGTAATGAACTTCATGCAACAGTTTAATTATAGTTATAATCAGCAACAAAACAGAATAAAAAACGACGAAACTTTCTCTGAAGAATACCATGGTTCATTCCTTCATGATCTTGAAAACAATAACGTTCTCAAATCAAACACGGAAGAGGAAAATGATAACAAAAGCTTGATGACAGATAATAATCAATATATGTTTGTTGATCCATTGGACTCAAAAAAGAAACAAGAAAATGGTGTTGGTAGATCAGATTCTATGTCAGATTGTAGTGATCAGAATGAAGAAGAAGATGATGGAAAATATAGGAGAAGGAGTGGAAAAGGAAACCAATCAAAGAACCTTGTTGCAGAGAGAAAAAGAAGGAAGAAACTGAATGATAGATTGTATAATCTTCGTTCTTTGGTTCCGAGAATCTCGAAGCTTGATAGAGCTTCAATTCTTGGTGATGCTATTGAGTTTGTGAAGGATTTGCAGAAACAAGTGAAAGAACTTCAAGATGAACTTGAGGAAAATTCAGACACAGGAACTGAAAGTAACTGCATTGTTAATGGAAATAATAATAATCAATATGTTGGTGGTGTTCAAGTTCAACCAGATAATAATAATGTTGCAAAAGCAGAACATGGATTTCATGTTGGAAATGGCTATGTTTCAAAACAAAAGCAGGAAGATGTTGGTACTGTTACTGACAAGCAGACACAGCAGATGGAGCCACAAGTGGAAGTAGCTCAGATAGATGGAAATGAATACTTTCTGAAGGTGTTCTGTGAGCATAGGCCTGGTGGTTTTGTGAAATTGATGGAAGCTTTCAACACTCTAGGCATGGATGTAGTACATGCCACAGTAACCAGTCACAAGGGTCTTGTCTCAAATGTTTTCAAAGTGGAGAAAAAGGAGAGTGAAATAGTTGAGGCTGAAGATGTAAGAGATTCACTACTAGAGCTGACAAGGAACAGATCTACATCATGTTGGAGTCATGAGATGGCAACATCAACATCATCAGAGAATGGTGTCATCAGTAGGGACCAACATGATCACCAGATTAATGCTGCTGCTGCCTATCATCCACATCAATTTAATACTTAA 1716 0.3619 MNNFIMQNFTERLRPLVGLNGWDYIVYWKLSDDQRFLEWLGCCCSGTESNQNVGEEHLFPVSSCRDTIFSHPRTKSCDLLSQLSTSIPTDSGIHAQTLLTNQPNWLNYPNTLDPNTLQETINGTHVLIPVPGGLVELFVTKQVGEDQQIIDLVTSQCIAMVDQEGMNHSFGFNSMSNMQSNQVLGGDENDGNKTNNHFHSSETMNLPHDISVMNFMQQFNYSYNQQQNRIKNDETFSEEYHGSFLHDLENNNVLKSNTEEENDNKSLMTDNNQYMFVDPLDSKKKQENGVGRSDSMSDCSDQNEEEDDGKYRRRSGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDTGTESNCIVNGNNNNQYVGGVQVQPDNNNVAKAEHGFHVGNGYVSKQKQEDVGTVTDKQTQQMEPQVEVAQIDGNEYFLKVFCEHRPGGFVKLMEAFNTLGMDVVHATVTSHKGLVSNVFKVEKKESEIVEAEDVRDSLLELTRNRSTSCWSHEMATSTSSENGVISRDQHDHQINAAAAYHPHQFNT 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06153 571 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 195 527 - -
Trre1g06153 571 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 318 367 IPR011598 GO:0046983
Trre1g06153 571 SMART finulus 324 373 IPR011598 GO:0046983
Trre1g06153 571 CDD ACT_UUR-ACR-like 462 525 - -
Trre1g06153 571 ProSiteProfiles ACT domain profile. 461 532 IPR002912 -
Trre1g06153 571 MobiDBLite consensus disorder prediction 281 329 - -
Trre1g06153 571 Coils Coil 357 384 - -
Trre1g06153 571 Pfam Helix-loop-helix DNA-binding domain 325 368 IPR011598 GO:0046983
Trre1g06153 571 Gene3D - 307 383 IPR036638 GO:0046983
Trre1g06153 571 Coils Coil 505 525 - -
Trre1g06153 571 CDD bHLH_AtAMS_like 321 391 - -
Trre1g06153 571 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 381 IPR036638 GO:0046983
Trre1g06153 571 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 11 155 IPR025610 -
Trre1g06153 571 SUPERFAMILY ACT-like 458 527 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06153 Trre-Chr1 65422702 65425489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06153 6 570 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 47.029 2.13e-146 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g06153 bHLH-MYC_N 1.2e-18 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06153 - - psat:127097943 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06153 1 65422702 65425489 Trre1g06153 1 65422702 65425489 ECH