Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06141 ATGAGTAGTAGTTGTGGTAGAGAAGGTGGAGGAGTAAGACAATACATAAGATCAAAAGTTCCTCGTCTCAGATGGACTCCTGAACTTCATCGTTGCTTTGTTAATGCCATTCAAACTCTTGGTGGTCATCATAAGGCTACCCCTAAACTTGTTCTTCAGTTAATGGATGTCAAAGGTCTCACTATTTCACATGTCAAGAGCCATCTTCAGATGTACAGAAGTATGAGAGGTGAATTAGGAAAACAAGGTAGGCCAAATTGCCAACATAGAAACCAAGGTTTTGAAGAGCATGATGATGGATGCGTTGATGAAGTGAATGATGTTAGTGTTGAGGAGCATTCTTTGAGGAGAGAATCAGATTCTTCTAACTTCTCAAAAAGAGCTAGAATAGAGAGGGGAAGTTGTTCTACAACAACTAATCTGCAATGCAGCCAAAGGAGAATATGTGATGATGCAGTAAAAAATCCTCCGTACTGCTTTTATGACTATGTACTACAGCCTAATACCAATACCAATACTATGGGTGGTAATGAGATGCATGATGAGCATAACAAGGATGAACAAGAGTTTTGTGGATGGCAGAGGAGGCAGATACAACCACTCAAATCTTCAGATTTTGGCATAAACCTCACTTCTTTCAAATCTCTAAACCAACAATCTGATTTCCCTCAGGATACTAATAATGTAAAAGACAGAAACACCCCTTCATGGGCAATTAATGGACTTACCAAAACTGACAGGGCACATGTAGAAGTTGAAGGTGAAGGAGGACATGAGTTGTCATTGTCTTTAACATTGCAAAATCCTTCACCTCAGACAAGTAATGTTTCTTATTCGGCCAGTGAAATCAGTGAGGCAATTTCATGTTGTCCTCCTCTTCCTCCTAATCCTGCTCTTGGTGGGTTTAGCAGCTATTACAAGGACTGCTCTAGAACATCTTCTACTGTTAATGAAAGGATTAACTTAGACCTATCTTTAGCCATTTATGGCAATTGA 996 0.3956 MSSSCGREGGGVRQYIRSKVPRLRWTPELHRCFVNAIQTLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGELGKQGRPNCQHRNQGFEEHDDGCVDEVNDVSVEEHSLRRESDSSNFSKRARIERGSCSTTTNLQCSQRRICDDAVKNPPYCFYDYVLQPNTNTNTMGGNEMHDEHNKDEQEFCGWQRRQIQPLKSSDFGINLTSFKSLNQQSDFPQDTNNVKDRNTPSWAINGLTKTDRAHVEVEGEGGHELSLSLTLQNPSPQTSNVSYSASEISEAISCCPPLPPNPALGGFSSYYKDCSRTSSTVNERINLDLSLAIYGN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06141 331 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 8 122 IPR046955 GO:0003700
Trre1g06141 331 Gene3D - 20 76 - -
Trre1g06141 331 NCBIfam myb-like DNA-binding domain, SHAQKYF class 21 74 IPR006447 GO:0003677
Trre1g06141 331 FunFam Myb family transcription factor 19 77 - -
Trre1g06141 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 77 IPR017930 -
Trre1g06141 331 Pfam Myb-like DNA-binding domain 23 73 IPR001005 -
Trre1g06141 331 SUPERFAMILY Homeodomain-like 19 74 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06141 Trre-Chr1 65340212 65343646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06141 5 79 G2-like Transcription Factor Family AT1G14600 72.152 1.41e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre1g06141 Myb_DNA-binding 1.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06141 - - tpra:123923253 536.569