Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06138 ATGGGTTTACAAAACCAGCTAAACGACGTGTCATCGGATTCAATTCCGTTACTAGTTTTGATGCACATCGCCACCTGCGTCAATTACATCCGTTCGATGCTTCTCACTTTCTTCCAATCCATCGGTCTCTCACGTCTTCAAACCGATCAGATCGTCGACGACCACTTCTTAGCCGCCGTTGGATCAGGACTCGCCGGACTCATCATGCTCTCCGATCAACTCACTCTCAACAACCAATTCTTCTACACATACGAAGATGCTTCTTCCCCAGATAACCACCGTTGCGTCTTTTGCCAATCCAATTTCGAAAACGGCGATCACGTTCGGAAGCTTCCTTGCCACCACGTCTTCCACCGTCACTGTCTTAACGGTTGGTTCCATCGGTACAACTTCAATTGTCCGTTATGCCGCTCAACGCTTATCTCCGATGAGCGCGTGGCGCTCACTGAACACCGTGTCGGTCGCCAACTCATCTCATGGTTCACACTTCGCTGA 495 0.499 MGLQNQLNDVSSDSIPLLVLMHIATCVNYIRSMLLTFFQSIGLSRLQTDQIVDDHFLAAVGSGLAGLIMLSDQLTLNNQFFYTYEDASSPDNHRCVFCQSNFENGDHVRKLPCHHVFHRHCLNGWFHRYNFNCPLCRSTLISDERVALTEHRVGRQLISWFTLR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06138 164 CDD RING-H2 95 137 - -
Trre1g06138 164 PANTHER RING ZINC FINGER PROTEIN-RELATED 86 146 - -
Trre1g06138 164 SMART ring_2 95 136 IPR001841 -
Trre1g06138 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 142 IPR013083 -
Trre1g06138 164 Pfam Ring finger domain 94 137 IPR001841 -
Trre1g06138 164 SUPERFAMILY RING/U-box 75 143 - -
Trre1g06138 164 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06138 Trre-Chr1 65320422 65320916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06138 1 163 C3H Transcription Factor Family AT1G15100 49.080 5.52e-47 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06138 K16282 - gmx:100803789 241.506