Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06132 ATGGAGCTTTCTGCATTCCCTATTTTCAAACCACTTTCCAATTCCCTTCCTTATCAATTTCCCTCTCGATGCTCTCTTTCTCTTCGTCACTGTGATTATGGCTTTCGTCGGAATCGCAATTCAAAACCGTTTCTACAAATCAGAATGTGCTCGGAGAAAGTTCCGTCCAACTGTTACGTCGATGTCATTGCCATTGGCGGTAGGAAGGATGCGGTTCTTGATTTCTGCTTAAACTCGCCGTTTCAGTTGTCTTCTCTGCGCTTTTGGAATGTCATTGTGAAAGATTCGCAAGAGGTGCAATTACAGCAAAGGTCTACTAAAGAAGAACCTCACCCAGGAATTGTCGAACCTCCAGTATTTATGAAGTCATGCTCAAAGACCATTGTCCTTGTGGCTAGTGCAGGATATGGACCAGACCACACTGTCGCTGTTGATATTTTTGAAACTGTAAGGTCCACAAATGGACTCACAATTGCTGTAGTTTTGAAGCCTTTTAGCTTTGAAGGGATAAGACGAAAAGATGAGGTAAAAGCTTTGATGGGGAAGCTTAAGGAGAATACTAATTTACTTATCGAAATTGATATTGACGCACTTCTCAAAAAAGACTTGTTGACTCTAGATGAGGCTATGAAGACTGCAAATGATGCTGTTTTGCTAGCTATTAAGGCCATATCTGTTCTAAAATCCGAAATGCACAAAAAATTTATAGATACATTGCACAGTAGCATGAAAGAAACATGCAATTCAGAAATTATTAAAATATTGGAGTGCTATAAAGAAGCCAGAATTGGATTTGGGGCTGCTTATAATATCAAAACTTCAATTTTGCAGTCTATATTTGATTGTCCTTTCCTGGGTGTTTCTTTGAAGGATCCAAATAGTGTAGTTATATGCATTGTTGCGTGTTCTGAACCCATCAATGATAGCGATGTAGCAGTATTTTTGCGTACTTTCCGTCAAACAACCGAATACACGAGGGATATTATAATATCAACAGTACTTGAGCCTGATGTAGAGCCCAACCTACTGATCACGACTGTCCTTACACTTGGCTTAACCGTGCAACAACCTTCCCAGAATGGTGGTATATTATCCAAACTTGCCCTGCATTTTCCTCGTGTTTTTAGCTTTTGGGGAAGACATAGTCAGCAACAAATTGTCTCTGGGAAAGAGGATGCAGTATCTTCTAATGAAATGATAAGATCTTATAACAGTGATGATGTTGAAAATAGGATTGCTCCCAGTATTGTTGATGAAAGATTTGACGAGCACTATACAGAATTGGAGCCAGACGTGAGCAACAACACCTCAAAGTTGTCTGCTTCAAGGGATTCTGAAAAAAATGAAGATTTATTTGACACCATAGCCAATTGTCCTATCCCTTATGAGTCCATTATTGAAGAAGGCGACTCTGCTTTTCAGAGGGAGCAGCTTGGAAAATGGAATCTGGGCCCTGGATTTGAAGTGGCAAAAGAGTGGGCCCAAGAAAGGGAAGCTGATGCTACACCAATGGTTGATAACCTAAGCATATTCCACCTTCCTGTTGGTGTGAGGCCTTCAGAAGAGTTGAAAGACAGTTTAGAAATCACATTTAGGTCAAAAAAGCATGAGCCGGATGCAGGTATGGAAGCAGTGATGGAATTTACATCTTCACTTTTAAAGGCAAAACATGCTAATAGTAATAAACCAAAGAAGCACGGTGTTCTGTCTGTTCGTGCTGCATCTATGCTGGAGGCAGAACGTGATTTGTCAACAAAGTGGAGTCCTGTTGTGGAAATACAATATAGGGGAGGAAGATACAAGGGACGGTGCCAAGGTGGTCTTCCTGAAGGAAAGGGGCGTCTTGTTCTTCAAGATGGAAATATCTACGACGGATTATGGCACAGTGGCAAGAAATCGGGTCCAGGAACATTCTATTTCAAGAATGGAGATATGTTTCAAGGATCGTGGAGGGATGATGTCATGCACGGCAAGGGTTGGTTTTATTTTCAAACTGGCGATCGGTGGTTTGCAAACTTCTGGAAGGGAAAGGCAAATGGAGAGGGGCGGTTTTACACAAAATCTGGTGATGCCTTCTTTGGCAATTTCAAAGACGGATGGCGGCATGGGCAGTTTTTTTGTGTGAATGCAAATGGAACGAGGTACACTGAAACTTGGGATCACGGTGTTCTTTTAGACAGCAAGCCTTTAGATAGATGA 2199 0.4143 MELSAFPIFKPLSNSLPYQFPSRCSLSLRHCDYGFRRNRNSKPFLQIRMCSEKVPSNCYVDVIAIGGRKDAVLDFCLNSPFQLSSLRFWNVIVKDSQEVQLQQRSTKEEPHPGIVEPPVFMKSCSKTIVLVASAGYGPDHTVAVDIFETVRSTNGLTIAVVLKPFSFEGIRRKDEVKALMGKLKENTNLLIEIDIDALLKKDLLTLDEAMKTANDAVLLAIKAISVLKSEMHKKFIDTLHSSMKETCNSEIIKILECYKEARIGFGAAYNIKTSILQSIFDCPFLGVSLKDPNSVVICIVACSEPINDSDVAVFLRTFRQTTEYTRDIIISTVLEPDVEPNLLITTVLTLGLTVQQPSQNGGILSKLALHFPRVFSFWGRHSQQQIVSGKEDAVSSNEMIRSYNSDDVENRIAPSIVDERFDEHYTELEPDVSNNTSKLSASRDSEKNEDLFDTIANCPIPYESIIEEGDSAFQREQLGKWNLGPGFEVAKEWAQEREADATPMVDNLSIFHLPVGVRPSEELKDSLEITFRSKKHEPDAGMEAVMEFTSSLLKAKHANSNKPKKHGVLSVRAASMLEAERDLSTKWSPVVEIQYRGGRYKGRCQGGLPEGKGRLVLQDGNIYDGLWHSGKKSGPGTFYFKNGDMFQGSWRDDVMHGKGWFYFQTGDRWFANFWKGKANGEGRFYTKSGDAFFGNFKDGWRHGQFFCVNANGTRYTETWDHGVLLDSKPLDR 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06132 732 Pfam MORN repeat 646 668 IPR003409 -
Trre1g06132 732 Pfam MORN repeat 605 621 IPR003409 -
Trre1g06132 732 Pfam MORN repeat 693 704 IPR003409 -
Trre1g06132 732 Pfam MORN repeat 623 645 IPR003409 -
Trre1g06132 732 Gene3D - 598 651 - -
Trre1g06132 732 Gene3D - 652 729 - -
Trre1g06132 732 SMART morn 644 665 IPR003409 -
Trre1g06132 732 SMART morn 690 711 IPR003409 -
Trre1g06132 732 SMART morn 621 642 IPR003409 -
Trre1g06132 732 SMART morn 598 619 IPR003409 -
Trre1g06132 732 SUPERFAMILY Tubulin nucleotide-binding domain-like 62 226 IPR036525 -
Trre1g06132 732 PANTHER RADIAL SPOKE HEAD 1 HOMOLOG 84 722 - -
Trre1g06132 732 MobiDBLite consensus disorder prediction 426 445 - -
Trre1g06132 732 Gene3D Tubulin/FtsZ, GTPase domain 105 351 IPR036525 -
Trre1g06132 732 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 597 723 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06132 Trre-Chr1 65274403 65281992 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06132 39 731 PP2C-type Phosphatase Gene Family AT1G75010 46.799 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06132 - - gsj:114371951 1035.4