Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06110 ATGGGATCTGAAGCTATGGTTCCAGAATGGGCATCAGAGCCTTGCATAATGGGAATTGACGAAGCTGGAAGAGGTCCTGTTCTTGGTCCTATGGTCTACGGTGCTCTTTACTGTCCTCGCTCCTACCAGAACACCCTAGCTACTCTCAGTTTCGCAGATTCGAAGACACTGAAAGAAGAGAAGAGGGAAGAATTATTTGAAACTTTGAAAACCAATGATTCTATTGGATGGGCTGTTGATGTTATTGACCCTAAGGAACTCTCTGCTAAAATGCTCAAGAAGAATAAGATAAACTTGAATGAGATATCACATGATTCTGCCATGGGCCTCGTTGATCGGGCGCTCAAAATGGGAGTGCTTCTAACTGAGGTTTATATTGATACAGTTGGAGATCCAGGGAAATATGAGACAAAGCTTTCTAAAAATTTTCCATCTATTAAATTTGTGGTTGCAAAGAAGGCTGACAGTCTTTATCCCGTTGTCAGTGGTGCAAGCATAGTTGCAAAGGTCACAAGAGACCGAGCTGTGAGAGAATGGGTGCTTGATGAGACTGCTGATAACATGCACAGGAATTTCGGCTCTGGATATCCTGGAGATCCCACAACCAAGTCTTGGCTAGAACATCACAAACATTCTATCTTTGGTTTTCCAACATTGGTCCGGTTTAGTTGGGGAACTTGCAGCTCTTATTTTAAAGGTGGTGCTGAAGTCTTATGGGAGTCTGACTTGGATGAAGATGGTGGCAGCAATAGTAATGGGAAGCGACAATTGAAATTAAAAAATATGGGTTTCACCACATCCAAGAAGAGAAGTGAGGAAATAGAATCAAGTGGCAAAGGGCGTTCTAGGTTTTTTCAGGCTCGGAAACTTGAGCACCTCACTCATTTCTAA 891 0.4276 MGSEAMVPEWASEPCIMGIDEAGRGPVLGPMVYGALYCPRSYQNTLATLSFADSKTLKEEKREELFETLKTNDSIGWAVDVIDPKELSAKMLKKNKINLNEISHDSAMGLVDRALKMGVLLTEVYIDTVGDPGKYETKLSKNFPSIKFVVAKKADSLYPVVSGASIVAKVTRDRAVREWVLDETADNMHRNFGSGYPGDPTTKSWLEHHKHSIFGFPTLVRFSWGTCSSYFKGGAEVLWESDLDEDGGSNSNGKRQLKLKNMGFTTSKKRSEEIESSGKGRSRFFQARKLEHLTHF 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06110 296 PANTHER RIBONUCLEASE H2 SUBUNIT A 5 283 IPR001352 GO:0003723|GO:0004523
Trre1g06110 296 ProSiteProfiles Ribonuclease (RNase) H type-2 domain profile. 14 236 IPR024567 GO:0004523
Trre1g06110 296 FunFam Ribonuclease 188 235 - -
Trre1g06110 296 MobiDBLite consensus disorder prediction 250 264 - -
Trre1g06110 296 FunFam Ribonuclease 1 186 - -
Trre1g06110 296 Gene3D Ribonuclease hii. Domain 2 187 236 IPR023160 GO:0004523
Trre1g06110 296 SUPERFAMILY Ribonuclease H-like 15 231 IPR012337 -
Trre1g06110 296 MobiDBLite consensus disorder prediction 244 280 - -
Trre1g06110 296 Gene3D - 2 186 IPR036397 GO:0003676
Trre1g06110 296 MobiDBLite consensus disorder prediction 265 280 - -
Trre1g06110 296 NCBIfam ribonuclease HII 16 229 IPR004649 GO:0004523|GO:0016070
Trre1g06110 296 CDD RNase_HII_eukaryota_like 17 236 - -
Trre1g06110 296 Pfam Ribonuclease HII 17 227 IPR024567 GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06110 Trre-Chr1 65127892 65131009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06110 1 296 Core DNA Replication Machinery Family AT2G25100 66.892 6.81e-152 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06110 K10743 - gmx:100779875 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06110 1 65127892 65131009 Trre1g06110 1 65127892 65131009 ECH