Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06069 ATGTATCAGAAGAAAATCACTATGGCGACTGACGCTACAGCCACAATGCAGTGGCCAACTCATTGGACTCGTGAAGACATCAAGATTTTCGAGAGAGCTCTTGGGATGGTGCCGGAGGGAGAAGATTGCCGAACAAGTTCCCGTGGATCATCTGATTCAGATTCTTCGAATAAGACTAGACATGCTGATAAGGAGAAGAAGAAGATGAAAAAAGGAAGATCATGGACCGAAGATGAACATGTGCTGTTTCTTGCTGGGCTTGAGAAATACGGGAAAGGAGATTGGAGAAGCATTTCAAGACATTTTGTTGTGACGAGAACACCAACTCAGGTAGCAAGCCATGCTCAGAAGTACTTTAAACACATCGAGCAAAAGAGTGAAGTGAAAAATAAAAAGAGAACAAGATCAAGTATTCATGACATTACATTGGGAGATAATAACCCAGCTACGGTGCCTATTGATCAGAACATTGTTAAGAATCAATTTTGA 489 0.4151 MYQKKITMATDATATMQWPTHWTREDIKIFERALGMVPEGEDCRTSSRGSSDSDSSNKTRHADKEKKKMKKGRSWTEDEHVLFLAGLEKYGKGDWRSISRHFVVTRTPTQVASHAQKYFKHIEQKSEVKNKKRTRSSIHDITLGDNNPATVPIDQNIVKNQF 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06069 162 SMART sant 71 121 IPR001005 -
Trre1g06069 162 Pfam Myb-like DNA-binding domain 74 119 IPR001005 -
Trre1g06069 162 SUPERFAMILY Homeodomain-like 69 123 IPR009057 -
Trre1g06069 162 CDD SANT 74 119 IPR001005 -
Trre1g06069 162 ProSiteProfiles SANT domain profile. 70 123 IPR017884 -
Trre1g06069 162 FunFam transcription factor MYB1R1 73 124 - -
Trre1g06069 162 NCBIfam myb-like DNA-binding domain, SHAQKYF class 70 121 IPR006447 GO:0003677
Trre1g06069 162 ProSiteProfiles Myb-like domain profile. 67 119 IPR001005 -
Trre1g06069 162 PANTHER TRANSCRIPTION FACTOR KUA1 40 149 - -
Trre1g06069 162 Gene3D - 73 124 - -
Trre1g06069 162 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 123 IPR017930 -
Trre1g06069 162 MobiDBLite consensus disorder prediction 38 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06069 Trre-Chr1 64969987 64970833 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre1g06069 Myb_DNA-binding 8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06069 - - tpra:123883408 145.591