Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06068 ATGTATCAGAAGACAATTGCCATGACTAACGCCGCCACCACCGCCGCCACAACCCGGTGGCCGAGTCATCCAACTCAGTGGACTCGTGAAGACGACAAGCTTTTCGAGCGAGCTCTTTTGATGGTGCCGGAGGATTTACCTAACCGGTGGGAGAAGATCGCGGAACAAGTTCCTGGTAAGTCGGTGGTGGAAGTGAGGGATCATTATGAAGATTTGGTTCATGATGTTTTGGAAATTGATTCGGGTCGGGTTGAGGTTCCGAGCTATCCTGATGACATGGCGGTGAGTGGTGGCGGTGGAGGTGGATTATCTGATTGGGATTCTTCGAATCAAATATCGTTTGGTTCGAAGACTAGACATAGTGATAACGAGAGGAAGAAAGGAACACCATGGACTGAAGAAGAACACAGGCTGTTTCTTGTTGGGCTTACCACATATGGCAAAGGAGATTGGAGAAGCATCTCAAGAAATGTTGTTGTGACAAGAACACCAACACAAGTAGCTAGCCATGCTCAAAAGTACTTTCTTCGCCAAAGTGCGGTGAAAAAAGAGAGGAAAAGATCAAGCATTCACGACATTACATCGGTAGACACTAATAAAGCTCCGGTGCCTATTGATCAGAATTGGGTTCCTCCTCCCGGTGGTCAGCCTCAACAAAATCATCATTACCCCTCGAACAATTTGCATGATCAAATGGGTTCATTTGGGTATTCAAACTATGGATTTTAA 729 0.4623 MYQKTIAMTNAATTAATTRWPSHPTQWTREDDKLFERALLMVPEDLPNRWEKIAEQVPGKSVVEVRDHYEDLVHDVLEIDSGRVEVPSYPDDMAVSGGGGGGLSDWDSSNQISFGSKTRHSDNERKKGTPWTEEEHRLFLVGLTTYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQSAVKKERKRSSIHDITSVDTNKAPVPIDQNWVPPPGGQPQQNHHYPSNNLHDQMGSFGYSNYGF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06068 242 MobiDBLite consensus disorder prediction 87 129 - -
Trre1g06068 242 FunFam transcription factor MYB1R1 129 180 - -
Trre1g06068 242 Gene3D - 22 86 - -
Trre1g06068 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 179 IPR017930 -
Trre1g06068 242 MobiDBLite consensus disorder prediction 186 230 - -
Trre1g06068 242 CDD SANT 130 175 IPR001005 -
Trre1g06068 242 MobiDBLite consensus disorder prediction 212 230 - -
Trre1g06068 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 77 IPR017930 -
Trre1g06068 242 SUPERFAMILY Homeodomain-like 25 81 IPR009057 -
Trre1g06068 242 ProSiteProfiles Myb-like domain profile. 123 175 IPR001005 -
Trre1g06068 242 NCBIfam myb-like DNA-binding domain, SHAQKYF class 126 178 IPR006447 GO:0003677
Trre1g06068 242 Pfam Myb-like DNA-binding domain 130 175 IPR001005 -
Trre1g06068 242 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Trre1g06068 242 ProSiteProfiles SANT domain profile. 126 179 IPR017884 -
Trre1g06068 242 Gene3D - 129 181 - -
Trre1g06068 242 MobiDBLite consensus disorder prediction 103 117 - -
Trre1g06068 242 FunFam Transcription factor SRM1 21 86 - -
Trre1g06068 242 SUPERFAMILY Homeodomain-like 125 179 IPR009057 -
Trre1g06068 242 SMART sant 127 177 IPR001005 -
Trre1g06068 242 SMART sant 23 75 IPR001005 -
Trre1g06068 242 CDD SANT 27 73 IPR001005 -
Trre1g06068 242 ProSiteProfiles Myb-like domain profile. 27 73 IPR001005 -
Trre1g06068 242 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 22 230 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06068 Trre-Chr1 64962188 64963700 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre1g06068 Myb_DNA-binding 2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06068 - - gmx:547481 365.155