Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06067 ATGTATCAGAAGACAATCACTATGGCTACGCCCTCCGCCACAATGCAGTGGCCAGCTCAATGGACTCGTGAAGACGTCAAGATTTTCAAGAGAGCTCTTGTGATGGTACCGGAGGATTTACCTAACCGGTGGGAGAAGATTGCCGAACAAGATTCCGGTAAGTCGGCAGCGGAAGTGAGGGATCACTATGATAATTTGCTTCATCAAATTTTGGAAATTGAATCTGGTCTGGCTGAGGTTCCAAATTATCCTGATGACTTGGTTTTGAGTGGTGGCAGTGGATCCTCTGATTCGGATTCTTCAAAGAAGACTAGACATGACAAGGAGAAGAGGAAGACGAAGAAAGGAAGACCATGGACCGAAGATGAACATAGGCTGTTTCTTGCTGGACTGGAGAAATACGGGAAAGGAGATTGGAGAAGCATTTCAAGAAATTTTGTTGTGACGAAAACACCAACTCAGGTAGCAAGCCATGCTCAGAAATACTTTAATCACAAGCAGCAAAAGAGTGAAGTGAAAAATAAAAAGAGGACAAGAACAAGCATTCATGACATTACACTGGGAGATAGTAACTCATCTCCGGTGCCTATTGATCAAAACTGTGTTCCTCCTCTCGGTGTTGGTTCATTGCAACAGCCCCAAGGAATGCATTATTATCCCTCACTTCCACCAAGTGATCAACCGTAG 687 0.4425 MYQKTITMATPSATMQWPAQWTREDVKIFKRALVMVPEDLPNRWEKIAEQDSGKSAAEVRDHYDNLLHQILEIESGLAEVPNYPDDLVLSGGSGSSDSDSSKKTRHDKEKRKTKKGRPWTEDEHRLFLAGLEKYGKGDWRSISRNFVVTKTPTQVASHAQKYFNHKQQKSEVKNKKRTRTSIHDITLGDSNSSPVPIDQNCVPPLGVGSLQQPQGMHYYPSLPPSDQP 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06067 228 ProSiteProfiles Myb-like domain profile. 21 67 IPR001005 -
Trre1g06067 228 Gene3D - 117 168 - -
Trre1g06067 228 ProSiteProfiles Myb-like domain profile. 111 163 IPR001005 -
Trre1g06067 228 MobiDBLite consensus disorder prediction 165 183 - -
Trre1g06067 228 Gene3D - 17 81 - -
Trre1g06067 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 167 IPR017930 -
Trre1g06067 228 CDD SANT 118 163 IPR001005 -
Trre1g06067 228 CDD SANT 21 67 IPR001005 -
Trre1g06067 228 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 203 IPR043363 -
Trre1g06067 228 SUPERFAMILY Homeodomain-like 20 75 IPR009057 -
Trre1g06067 228 MobiDBLite consensus disorder prediction 84 119 - -
Trre1g06067 228 MobiDBLite consensus disorder prediction 165 228 - -
Trre1g06067 228 MobiDBLite consensus disorder prediction 184 198 - -
Trre1g06067 228 FunFam transcription factor MYB1R1 117 168 - -
Trre1g06067 228 SMART sant 115 165 IPR001005 -
Trre1g06067 228 SMART sant 17 69 IPR001005 -
Trre1g06067 228 SUPERFAMILY Homeodomain-like 112 167 IPR009057 -
Trre1g06067 228 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Trre1g06067 228 Pfam Myb-like DNA-binding domain 118 163 IPR001005 -
Trre1g06067 228 ProSiteProfiles SANT domain profile. 114 166 IPR017884 -
Trre1g06067 228 NCBIfam myb-like DNA-binding domain, SHAQKYF class 114 166 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06067 Trre-Chr1 64958848 64959795 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre1g06067 Myb_DNA-binding 1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06067 - - tpra:123883408 248.825