Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06063 ATGGGAAAGAAAAATTTGAAACTACCTTCTCTTTTCAAAACCAAAGAATCACATCCAACAAAACAACATCCTTGGAAATTCTTGCCATCTTGTAATCATCCAAAAACGGTTTCTTTTCGAACCGGTGTTGATGATGACATATTCAAAACAGTTAATTCAGTTTATTTTGACCAAACAGAGAACAACATTATTGAAACACCAAAATCATGGTTCACAACATCATCAGAATCTGCAAGTATCTCAACAGAATCAGAAGAATATTGTTTCTACAACGACGGTGAATCATTAGAGACATTGGTTGCCGGAGTTAAATCAGAGAGGTCATCGGAGAGACTGTTTTTCGAAGCAGAAGACACGAGTTCGATCTTGGAAAAAGCGAAAGCGGATAGTTTTCCGTTTAAAGAAAGTGTTGTGTTAGCTATGGAGTCAGATGATCCATATGAAGATTTTAAGAGATCAATGGAAGAAATGGTTGAGTCACATGGTGTGAAAGATTGGGAAGGTTTAGAAGAGCTTTTGAGTTGGTATTTAAGAGTTAATGGTAAAAATAATCATGGTTTTATTATTGGTGCTTTTGTTGATTTGTTGATTAGTTTAGCAGGTTCTAATAATAATGATTCTAATTCTGATTTAACTTTATATTCTTCTGCTGTTTCTTCTTTTAGTTCTTCACCTTTGTACCTATGTGAAGGACAGAATGAGATTACTGAGATTGTTGAAGATAATAATAATGTAACAGCTTCTTAG 747 0.34 MGKKNLKLPSLFKTKESHPTKQHPWKFLPSCNHPKTVSFRTGVDDDIFKTVNSVYFDQTENNIIETPKSWFTTSSESASISTESEEYCFYNDGESLETLVAGVKSERSSERLFFEAEDTSSILEKAKADSFPFKESVVLAMESDDPYEDFKRSMEEMVESHGVKDWEGLEELLSWYLRVNGKNNHGFIIGAFVDLLISLAGSNNNDSNSDLTLYSSAVSSFSSSPLYLCEGQNEITEIVEDNNNVTAS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06063 248 MobiDBLite consensus disorder prediction 1 23 - -
Trre1g06063 248 Pfam Transcriptional repressor, ovate 143 199 IPR006458 -
Trre1g06063 248 ProSiteProfiles OVATE domain profile. 139 198 IPR006458 -
Trre1g06063 248 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 23 199 IPR038933 GO:0045892
Trre1g06063 248 NCBIfam uncharacterized plant-specific domain TIGR01568 137 200 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06063 Trre-Chr1 64886967 64887713 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Trre1g06063 Ovate 7.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06063 - - mtr:25485550 376.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04525 13 52780544 52781452 Trre1g06063 1 64886967 64887713 ECH
Trre1g02325 1 18682994 18683662 Trre1g06063 1 64886967 64887713 ECH
Trre1g06063 1 64886967 64887713 Trre1g06063 1 64886967 64887713 ECH