Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06062 ATGCTTCTTCCTATGAGCTGCATTCTTTTAATGTGTCTATTATTATTCACTTCATTTTCACCACAAATCAAAGCTACTAAAACCATCTCAAATCTCACCTTACCCTACCAACATCCTTACCCTGAAGCTGTTGTTCATGAACTTCAACAGAAAATCAATGTATCATTTTTCAGAAGAGAACTACTCGGAAAAGAACAAGGTTCTTGTTTAACAGGAAACCCAGTCGATGATTGTTGGCGATGCGACGCAAACTGGGCAGAAAATCGTCAGAAGTTAGCAGAATGTGGAATTGGTTTCGGACGCGCTGCCATGGGAGGTAAAAACGGTCAGATCTACATCGTAACAGATTCCTCTGATAAAGACCCAGCAAATCCCATTCCAGGAACACTCCGTCACGCCGTAATTCAAGATGAACCACTATGGATTATCTTCGCCGCCGACATGACAATAAATCTCCGTCATGAACTAATTTTCAATTCATTCAAAACCGTCGACGGCCGCGGCGCAAATGTTCAAATCACCGGTCACGGTTGCATCACACTACAATACATCTCAAACATAATTATCCATAATATCCATGTTCATCACTGTAAACCATCGGGTAACACTAACATACGGGCGAGTCCAACGCATGTTGGATTCAGAGGAATATCAGACGGTGATGGAATATCAATATTCGGTTCTCGTAACATCTGGATCGATCATTGTTCTTTATCTTATTGTACTGATGGTTTGATTGATGCTATTATGGGTTCAACTGCAATAACAATTTCGAATAATCATTTTGCACATCATGATGAAGTTATGTTATTAGGTCATAATGATAAGTATAGTCCTGATAAAGGAATGCAAGTTACGATTGCGTTTAATCACTTTGGTCAAGGACTTATTCAAAGAATGCCAAGGTGTAGACTTGGTTATATTCATGTTGTTAATAATGATTTTACTCAATGGGAAATGTATGCTATCGGAGGTAGTGCTAATCCTACTATTAACAGTCAAGGTAACCGTTACACCGCTCCTTCCGATCCAAATGCTAAAGAGGTGACAAAGCGCGTGGATACGGATGATAAAGAATGGAGTGGTTGGAATTGGAGGACGGAGGGGGATGTAATGGTAAATGGTGCGTTCTTTGTGCCATCTGGGGCGGAGATGAGTGCTGAGTATGCAGAGGCGTCTAGTGTGCAACCGAAGCCCGTCGTGCAAATTGATCAGCTCACCATGTACTCCGGTGTTTTCGGTGATCCCAGGGATAATGGAGATATATATCCCGGTTTCAACGGTGGTGGGACCACAACTGGAGCCTCTAGCAAGGGTTACAATGGAAATGGGGGGTCCAGTAGTAGTGACGATGGAGACTTCTTTGGGATGATATTCAAAGGTAGTAGCAGCCAAGCAGCAGCACCGCTAGCAACTTACTCATCAATTGTATTTGTTTCAACTTTTTTGTCTCTTTTAATTATTTTTATTTTGGACACTACCACCAACTATGATATTCTATTATGA 1506 0.4143 MLLPMSCILLMCLLLFTSFSPQIKATKTISNLTLPYQHPYPEAVVHELQQKINVSFFRRELLGKEQGSCLTGNPVDDCWRCDANWAENRQKLAECGIGFGRAAMGGKNGQIYIVTDSSDKDPANPIPGTLRHAVIQDEPLWIIFAADMTINLRHELIFNSFKTVDGRGANVQITGHGCITLQYISNIIIHNIHVHHCKPSGNTNIRASPTHVGFRGISDGDGISIFGSRNIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFAHHDEVMLLGHNDKYSPDKGMQVTIAFNHFGQGLIQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPSDPNAKEVTKRVDTDDKEWSGWNWRTEGDVMVNGAFFVPSGAEMSAEYAEASSVQPKPVVQIDQLTMYSGVFGDPRDNGDIYPGFNGGGTTTGASSKGYNGNGGSSSSDDGDFFGMIFKGSSSQAAAPLATYSSIVFVSTFLSLLIIFILDTTTNYDILL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06062 501 SMART amb_all 147 344 IPR002022 -
Trre1g06062 501 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Trre1g06062 501 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Trre1g06062 501 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
Trre1g06062 501 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Trre1g06062 501 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Trre1g06062 501 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Trre1g06062 501 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Trre1g06062 501 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Trre1g06062 501 Gene3D - 72 414 IPR012334 -
Trre1g06062 501 PANTHER PECTATE LYASE 18-RELATED 36 413 IPR045032 GO:0030570
Trre1g06062 501 FunFam Pectate lyase 72 414 - -
Trre1g06062 501 Pfam Pectate lyase 155 336 IPR002022 -
Trre1g06062 501 SUPERFAMILY Pectin lyase-like 67 386 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06062 Trre-Chr1 64868135 64873724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06062 25 419 Polysaccharide Lyase AT3G54920 66.259 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06062 K01728 - gmx:100808438 800.431