Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06054 ATGGCTGAGGAAAATTCTCATTCAGATATTTTGTCAGAAGAAAATGGAACTCAAGAGCCTCCAAGACCTGTAGAAGAAGAAGTTGCTGAGCTTTCTTTATCACCACAAGATGACCGTAAAGATCCAAAGCAGGAGGTTCAGGCTCAGTCTGCTGAGGCCGAGCCAAAAGATCCAAAGCAGGAGGTTCAGGCTCAGTCTGCTGAGGCCGAGCCAAAAGCGAAATATGAGGAAATTCCTTCCGGTCATGATGAAGAAAAAGAGCAGATGAAGAAAAGGCACTTGAATGTTGTGTTTATTGGGCATGTTGATGCTGGCAAATCTACAACTGGAGGTCAGATACTTTTCCTAAGTGGTCAGGTTGATGATCGAACTATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTCGAGAAAGCTGGTACATGGCCTATATTATGGACACAAATGAGGAGGAGAGAGTAAAGGGAAAGACTGTTGAAGTTGGAAGAGCACATTTTGAGACAGATACAACAAGGTTCACCATTTTGGATGCACCTGGCCACAAGAGCTATGTTCCTAATATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACATTGGGTGTGACTAAGCTGCTTGTGGTTGTCAATAAAATGGATGATCCTACAGTAAATTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGATTCCATTTCTAAAGCAATCAGGATACAATGTAAAGAAAGATGTCTCTTTTTTACCAATATCGGGGCTCATGGGTTTAAACTTAAAAACAAGATTGGATAAAAGCCATTGTTCATGGTGGGATGGACCTTGCTTATTTGAAGCCCTTGATAGTATTGAAGTTCCTATGGGAGATCCCAAAAGTCCTTTCAGGATGCCTATAATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGTACTATTAGGGATGGAGATTCCCTTTTGATCATGCCAAATAAGGATCATGTAAAAGTTGTTGCTATATATATCGATGAAAATCGGGTTAAATGCGCTGGACCTGGTGAAAATTTACGGGTTCGAATATCTGGTGTTGAAGAAGAAGACCTATTGTCTGGGTTTGTCCTGTCTAGTGCTGCAAATCCAATATCAACAGTTACTGAGTTTGTTGCTCAATTGCAGATCCTTGAGTTACTGGACAATGCTATTTTTACTGCTGGATACAAAGCTGTTCTGCACGTTCACTCTGTAGTTGAGGAATGTGAGATTGTTGAGCTATTGCAACAAATTGATCCAAAGACTAGGAAGCCTATAAAAAAGAAAGTTCTCTTTGTAAAGAATGGCGCTATTGTATTATGCCGTGTTCAGGTTAATAACGTGATCTGTGTTGAGAAGTTCTCTGATTTTCCACAACTAGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTGGCTGTGGGGAAAATCACTGCTCTCTGA 1554 0.4073 MAEENSHSDILSEENGTQEPPRPVEEEVAELSLSPQDDRKDPKQEVQAQSAEAEPKDPKQEVQAQSAEAEPKAKYEEIPSGHDEEKEQMKKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETDTTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVTKLLVVVNKMDDPTVNWSKERYDEIESKMIPFLKQSGYNVKKDVSFLPISGLMGLNLKTRLDKSHCSWWDGPCLFEALDSIEVPMGDPKSPFRMPIIDKFKDMGTVVMGKVESGTIRDGDSLLIMPNKDHVKVVAIYIDENRVKCAGPGENLRVRISGVEEEDLLSGFVLSSAANPISTVTEFVAQLQILELLDNAIFTAGYKAVLHVHSVVEECEIVELLQQIDPKTRKPIKKKVLFVKNGAIVLCRVQVNNVICVEKFSDFPQLGRFTLRTEGKTVAVGKITAL 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06054 517 PRINTS GTP-binding elongation factor signature 95 108 IPR000795 GO:0003924|GO:0005525
Trre1g06054 517 PRINTS GTP-binding elongation factor signature 234 243 IPR000795 GO:0003924|GO:0005525
Trre1g06054 517 PRINTS GTP-binding elongation factor signature 174 184 IPR000795 GO:0003924|GO:0005525
Trre1g06054 517 PRINTS GTP-binding elongation factor signature 190 201 IPR000795 GO:0003924|GO:0005525
Trre1g06054 517 Pfam Elongation factor Tu C-terminal domain 407 516 IPR004160 -
Trre1g06054 517 Coils Coil 513 517 - -
Trre1g06054 517 PANTHER TRANSLATION FACTOR 85 516 - -
Trre1g06054 517 FunFam Putative translation elongation/initiation factor family protein 409 517 - -
Trre1g06054 517 MobiDBLite consensus disorder prediction 19 63 - -
Trre1g06054 517 Pfam Elongation factor Tu domain 2 335 401 IPR004161 GO:0005525
Trre1g06054 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 326 IPR027417 -
Trre1g06054 517 CDD eRF3_C_III 409 517 - -
Trre1g06054 517 MobiDBLite consensus disorder prediction 70 89 - -
Trre1g06054 517 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 319 405 - -
Trre1g06054 517 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 411 516 IPR009001 -
Trre1g06054 517 Gene3D - 74 315 IPR027417 -
Trre1g06054 517 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 91 320 IPR000795 GO:0003924|GO:0005525
Trre1g06054 517 CDD eRF3_II 322 403 - -
Trre1g06054 517 Gene3D Translation factors 409 517 - -
Trre1g06054 517 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 70 315 - -
Trre1g06054 517 Gene3D Translation factors 320 405 - -
Trre1g06054 517 SUPERFAMILY Translation proteins 315 407 IPR009000 -
Trre1g06054 517 MobiDBLite consensus disorder prediction 1 89 - -
Trre1g06054 517 Pfam Elongation factor Tu GTP binding domain 91 293 IPR000795 GO:0003924|GO:0005525
Trre1g06054 517 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 147 162 IPR031157 -
Trre1g06054 517 CDD EF1_alpha 95 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06054 Trre-Chr1 64810494 64818118 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06054 91 517 Eukaryotic Initiation Factors Gene Family AT5G60390 38.372 1.57e-95 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06054 K03267 - gmx:100793653 811.216