Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06053 ATGGCAGTAGGTAGTTCAATTGGTGTTCATGGTTGGGGAGACATGAAGAGTCTCACCGTCCAGTTTGTCACTGGACGGTGGTTCGTCGTGTTTGCCTCCTTTCTAATCATGGCGGCCGCCGGAGCCACCTATATGTTCGGCTTATACTCCCCCGTAATAAAATCGGAACTTGGTTATGACCAAAGCACACTAAACCTCCTTAGTTTTTTCAAAGATTTTGGTAGTAACGTTGGTGTCCTTTCAGGACTAATCAATGAACTCTATCCACCTTGGGTAGTTTTAACAATAGGTGCTATTCTAAATTTCTTTGGTTATTTCATGATTTGGTTATCAGTTACCAAAAAAATAGCAAAACCAAAAGTTTGGCAAATGTGTCTTTACATTTGCATAGGTGCTAATTCACAATCTTTTGCAAACACTGGTTCACTTGTTACTTGTGTTAAGAATTTCCCCGAATCTCGCGGCGCGGTTTTGGGAATTCTTAAAGGCTATGTTGGTCTTAGTGGTGCAATTATCACACAACTTTATTCTGCTATTTATTATGATGATACAAAGGCTTTGATTTTGTTTATAGGTTGGCTTCCTGCTGCTATTTCTTTTGCTTTTCTTCGAACCATTCGATATATGAAACCTGTTCGACAAGTTAACGAACTTAAGGTTTTTTATAATTTCTTGTATATTTCACTTGGTCTTGCTGGTTTTTTGTTGGTTATGATCATAATTCAAAAGAAGGCTAGTTTCTCACAGAGTGAATATGGTGTAAGTGCTGCTGTAGTAATTTTCTGTCTTTTTCTTCCACTTATTGTTGTTTTCATTGAAGAGAACAAGATTTGGCAGAGTAAGAAACTTGCTTTGGTTGATCCTTCACCAGTGAAAATAGTAACACAAAGTGAAACTGTTACTGAAACCGAAAAAGAAAAAGTCAACTCTGTAGTTTCAATTTCACCTCCCAAAAAAGATACAAAATGGAATGAAGATGTGTTTAATCCACCAGCAAGAGGTGATGATTATACAATACTTCAAGCACTTTTCAGCATAGACATGTTGATACTATTTGTAGCATGTATTTGTGGTGTTGGTGGAACATTAACAGCAATTGATAATCTTGGTCAAATAGGAACATCACTAAGATATCCAAAGAAAAGCATAAGCACTTTTGTGTCATTAGTAAGTATTTGGAATTATCTAGGAAGAGTTTTCTCAGGATTTGTTTCAGAACATTTTCTAACAAAATACAGATTTCCTCGTCCTCTTATGCTTACTTTAACACTCTTTGTCTCTTGTATTGGACATCTTTTGATAGCATTTGATGTTCCAAATGGTCTCTACATAGCTTCAGTTATTATTGGCTTTTGTTTTGGTGCTCAATGGCCATTACTTTTTGCTATAATTTCAGAACTTTTTGGACTTAAATATTATGCAACTTTGTATAATTTTGGAAGTGTTGCAAGTCCACTTGGGTTATATGTCCTTAATGTGAAGATCACTGGTCATTTATATGACAAAGAAGGTACAAAACAATTAGAAGCACTTGGATTAAAGAGACAAGAAGGACAACAATTGAATTGTGTTGGTGTTGATTGTTTCAAGTTATCTTTCATTATTATTACAGCTGCTACATTTTTTGGTGCTGTTTTTTCACTTCTTTTAGTGGCTAGAACAAGAAAGTTTTACAAAGGTGACATATACAAGAAATTCAGAGAAGAAGCTATGGTGACAGAAGCTGAAATGGTGGGGAAAAAGACAGAAGAAGATGCCAAAGTTGGTCAGCAACATGTGGTGACAACTTAA 1791 0.3573 MAVGSSIGVHGWGDMKSLTVQFVTGRWFVVFASFLIMAAAGATYMFGLYSPVIKSELGYDQSTLNLLSFFKDFGSNVGVLSGLINELYPPWVVLTIGAILNFFGYFMIWLSVTKKIAKPKVWQMCLYICIGANSQSFANTGSLVTCVKNFPESRGAVLGILKGYVGLSGAIITQLYSAIYYDDTKALILFIGWLPAAISFAFLRTIRYMKPVRQVNELKVFYNFLYISLGLAGFLLVMIIIQKKASFSQSEYGVSAAVVIFCLFLPLIVVFIEENKIWQSKKLALVDPSPVKIVTQSETVTETEKEKVNSVVSISPPKKDTKWNEDVFNPPARGDDYTILQALFSIDMLILFVACICGVGGTLTAIDNLGQIGTSLRYPKKSISTFVSLVSIWNYLGRVFSGFVSEHFLTKYRFPRPLMLTLTLFVSCIGHLLIAFDVPNGLYIASVIIGFCFGAQWPLLFAIISELFGLKYYATLYNFGSVASPLGLYVLNVKITGHLYDKEGTKQLEALGLKRQEGQQLNCVGVDCFKLSFIIITAATFFGAVFSLLLVARTRKFYKGDIYKKFREEAMVTEAEMVGKKTEEDAKVGQQHVVTT 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06053 596 CDD MFS_Mch1p_like 25 544 - -
Trre1g06053 596 FunFam Nodulin family protein 339 560 - -
Trre1g06053 596 Gene3D MFS general substrate transporter like domains 339 559 IPR036259 -
Trre1g06053 596 Gene3D MFS general substrate transporter like domains 21 214 IPR036259 -
Trre1g06053 596 Pfam Nodulin-like 26 271 IPR010658 -
Trre1g06053 596 SUPERFAMILY MFS general substrate transporter 25 557 IPR036259 -
Trre1g06053 596 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 27 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06053 Trre-Chr1 64804883 64806673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06053 13 569 Nodulin-like Gene Family AT2G39210 71.964 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06053 - - pvu:PHAVU_007G024800g 959.518