Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06040 ATGTCACAAACTTATGGATCACTTTTCCTACTCAAACTTGGTTCAAAAAACTTGGTTGTTGTCTCTGATCCAAACCTTGCAACAGAAGTTCTTCATTCACAAGGAGTCGAATTCGGTTCTCGTCCTCGTAATGTTGTCTTTGATATCTTCACTGGTAATGGACAAGACATGGTTTTCACTGTCTATGGTGATCATTGGCGTAAAATGCGAAGAATCATGACATTGCCATTTTTCACTAACAAAGTTGTGAATAATTATAGTAACATGTGGGAACAAGAGATGGATTTGGTTGTGAAAGATCTTAAGGCTAATGAGATTGTTAAAAGTGAAGGGATTGTTATCAGAAAACGTCTTCAATTGATGTTGTATAATATCATGTATAGAATGATGTTTGATTCCAAATTTGAGTCTCAAGAAGATCCTTTGTTCATTCAAGCTACAAGGTTTAACTCTGAGAGAAGTCGTTTGGCACAGAGTTTTGAGTACAATTATGGTGATTTTATACCTTTGCTTAGGCCATTTTTGAGAGGGTACCTTAACAAGTGCAAAGACTTGCAAACTAGGAGACTTGCATTTTTCAACAACTACTTTATTGAGAAGAGGAGAAAAATAATGGCAGCTAATGGGGAGAAGCATGAGATAATCTGTGCAATTGATCACATAATAGATGCTGAGATGAAAGGAGAAATAAGTGAAGAGAATGTGACATACATAGTAGAAAACATAAACGTTGCTGCAATAGAGACAACACTATGGTCAATGGAATGGGCAATAGCAGAGTTAGTGAATCATCCAAAAGTTCAAACTAAAATACGCGACGAGATATCAGAAGTGCTTAAAGGTGAACAAGTAACAGAATCAAATCTAAACAAATTACCATATTTACAAGCCACATTGAAAGAAATATTAAGATTGCATACACCAATACCACTATTAGTACCTCACATGAATCTTGAAGAGGCCAAGTTAGGAGAGTATATTATTCCTAAAGAGTCTAAAGTAGTTGTTAATGCATGGTGGCTTGCAAATAATCCATTATGGTGGGAAAAACCAGAGGAGTTTAGACCAGAGAGATTTTTGGAAGAGGAAAATGGAATTGATGCTGTTGCTGGTGGAGGGAAAGTTGATTTTAGATTTGTACCATTTGGTGTTGGAAGGAGAAGTTGTCCTGGAATTATACTTGCATTGCCAATATTGGGATTGGTTATTGCAAAATTGGTATCAAATTTTGAGATGAATGGTCCAAATGGAACTAAGATTGATGTTAGTGAAAAAGGTGGACAATTTAGTTTGCACATTGCTAACCATTCCACTGTTTTGTTCCAACCAATTCATTAG 1338 0.3587 MSQTYGSLFLLKLGSKNLVVVSDPNLATEVLHSQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVNNYSNMWEQEMDLVVKDLKANEIVKSEGIVIRKRLQLMLYNIMYRMMFDSKFESQEDPLFIQATRFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCKDLQTRRLAFFNNYFIEKRRKIMAANGEKHEIICAIDHIIDAEMKGEISEENVTYIVENINVAAIETTLWSMEWAIAELVNHPKVQTKIRDEISEVLKGEQVTESNLNKLPYLQATLKEILRLHTPIPLLVPHMNLEEAKLGEYIIPKESKVVVNAWWLANNPLWWEKPEEFRPERFLEEENGIDAVAGGGKVDFRFVPFGVGRRSCPGIILALPILGLVIAKLVSNFEMNGPNGTKIDVSEKGGQFSLHIANHSTVLFQPIH 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06040 445 PRINTS E-class P450 group I signature 389 412 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06040 445 PRINTS E-class P450 group I signature 296 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06040 445 PRINTS E-class P450 group I signature 254 280 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06040 445 PRINTS E-class P450 group I signature 234 251 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06040 445 PRINTS E-class P450 group I signature 2 21 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06040 445 PRINTS E-class P450 group I signature 121 139 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06040 445 PRINTS E-class P450 group I signature 379 389 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06040 445 PRINTS E-class P450 group I signature 26 47 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06040 445 PRINTS E-class P450 group I signature 337 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06040 445 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 444 - -
Trre1g06040 445 Gene3D Cytochrome P450 1 440 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06040 445 Pfam Cytochrome P450 2 434 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06040 445 SUPERFAMILY Cytochrome P450 2 432 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06040 445 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 382 391 IPR017972 GO:0005506|GO:0016705
Trre1g06040 445 PRINTS P450 superfamily signature 297 308 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06040 445 PRINTS P450 superfamily signature 380 389 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre1g06040 445 PRINTS P450 superfamily signature 245 262 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06040 Trre-Chr1 64686606 64688491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06040 2 443 Monolignol Biosynthesis Gene Families AT2G30490 65.618 0.0 609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06040 K00487 - gmx:100812188 769.615