Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06030 ATGATACCTTCATTCATGTCACTGATTTGTCTGGGAGAGAAACACTTGTCCGCATTACTTCTAGCTTGTGTAAAAGGTGGAGTGAAGGTTAAAGCAGATAGAGATGAATCATCTCCATATGTTGATATGCTTGCTGCACAAGATGTTGCTACAGGATGCAAGGAGCTGGGCATAACTGTTCTTCATATCAAGCTCCGTGCAATTGGAGGAAACAAGAACAAAACACCAGGTCCTGGTGCTCAGGCTGCTCGCACGTTCAGGAATGAAAATTGGTCGCATAGGCATCATAACATCGGACGAGTCAAACGAGGCATATAA 318 0.4403 MIPSFMSLICLGEKHLSALLLACVKGGVKVKADRDESSPYVDMLAAQDVATGCKELGITVLHIKLRAIGGNKNKTPGPGAQAARTFRNENWSHRHHNIGRVKRGI 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06030 105 SUPERFAMILY Translational machinery components 21 84 - -
Trre1g06030 105 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 24 89 IPR001971 GO:0003735|GO:0005840|GO:0006412
Trre1g06030 105 Pfam Ribosomal protein S11 20 83 IPR001971 GO:0003735|GO:0005840|GO:0006412
Trre1g06030 105 Gene3D Ribosomal protein S11 10 103 IPR036967 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06030 Trre-Chr1 64606440 64607260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06030 21 83 Cytoplasmic Ribosomal Protein Gene Family AT3G11510 76.190 4.55e-30 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06030 K02955 - acar:104518814 106.686