Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06025 ATGATGATGGGTTCTAGAAAATCTAGAGCCAAACCAAGGCCTCATCCTTTGAAAGAATCCAAATTGATGACAAGAAACTTGCGCATAGTTTTTGATGATCCTGATGCAACTGATTCATCCGAAGATGAGTCAAACCAATCAACAAGAATCAGACGAAGTATCATCGATATTCCGATGCCATCTGTTGTTTCTGCAGTATTATCTCAAAACAGTTGCTCCGAGAAGCCGAAGATTGTTACGAGGAAGAAGAAGACTTGTCTTTCACCACAAGCTCAAACCAAGAAGAAGGTTATTCCATCAACAACGACTGCTGCAGCAACAACAAGAAGGGGACAATCCTCTGCCAGATACCGAGGCGTTCGTATGCGAAAATGGGGGAAATGGGCCGCGGAGATTCGCGATCCTTTCAAAGGTGCTAGAATCTGGTTGGGAACTTACAACACTGCTGAAGAAGCTTCTCATGCTTATGAATCCAAAAGGCTTCAATTTGAAATGATGGAAGCTGAAATGGCTGCAGGAACACGACTCAATGGTGTTTCTGGTTCTTCTGTTGCAGCCCGTCCAGCTACCAATGCTGCTAATGCGTCTATGTCGGAGAGATTCTCAACAACTACTGAAGAATCTCAGAGCTTATTCTCACATGGATCGCCTTCTTCCGTGCTTGAATTGGATACCGTAGCATCATCCAATTTGATTGAGAAGGTTGATGTTCCATCAGTCAACAACGGATATGCTGCTGAAGACGAAGCGATTGAAATGGTGGCTTGTCAACTTGAAGAGCTAGAAATTCCAGATCTGAGTGTTTTGAACTTGCCCGAGCCACCAGTTGCTGCTGCAGAGAATCCTATTGGGACTGATCCCAATCTTGGTTTTGGATTCGATTTTGACCGTTTTAACATCGATGATTTTGAACTGGGTTATGATGACTTTGATGACGACCTTGGCGACTTAAGGAATCTTCACATTCATGGATTTGATGACAATGTGCCTAGTGAGCTTCCTGATTTTGATTTTGCTGCTGATGATGATGAATTTGCTGCTTGGATTGATGAACCCCTCCAACACAACATGCCTTGTCCCGAAGTTTTGTAG 1092 0.4359 MMMGSRKSRAKPRPHPLKESKLMTRNLRIVFDDPDATDSSEDESNQSTRIRRSIIDIPMPSVVSAVLSQNSCSEKPKIVTRKKKTCLSPQAQTKKKVIPSTTTAAATTRRGQSSARYRGVRMRKWGKWAAEIRDPFKGARIWLGTYNTAEEASHAYESKRLQFEMMEAEMAAGTRLNGVSGSSVAARPATNAANASMSERFSTTTEESQSLFSHGSPSSVLELDTVASSNLIEKVDVPSVNNGYAAEDEAIEMVACQLEELEIPDLSVLNLPEPPVAAAENPIGTDPNLGFGFDFDRFNIDDFELGYDDFDDDLGDLRNLHIHGFDDNVPSELPDFDFAADDDEFAAWIDEPLQHNMPCPEVL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06025 363 MobiDBLite consensus disorder prediction 15 35 - -
Trre1g06025 363 CDD AP2 115 156 IPR001471 GO:0003700|GO:0006355
Trre1g06025 363 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 225 - -
Trre1g06025 363 ProSiteProfiles AP2/ERF domain profile. 116 179 IPR001471 GO:0003700|GO:0006355
Trre1g06025 363 SMART rav1_2 116 170 IPR001471 GO:0003700|GO:0006355
Trre1g06025 363 Pfam AP2 domain 116 164 IPR001471 GO:0003700|GO:0006355
Trre1g06025 363 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Trre1g06025 363 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Trre1g06025 363 MobiDBLite consensus disorder prediction 190 216 - -
Trre1g06025 363 MobiDBLite consensus disorder prediction 1 48 - -
Trre1g06025 363 SUPERFAMILY DNA-binding domain 116 163 IPR016177 GO:0003677
Trre1g06025 363 Gene3D AP2/ERF domain 115 172 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06025 Trre-Chr1 64551939 64553030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06025 25 360 AP2-EREBP Transcription Factor Family AT1G68550 31.844 1.87e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g06025 AP2 6.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06025 - - tpra:123900395 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g06025 1 64551939 64553030 Trre1g06025 1 64551939 64553030 ECH