Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06022 ATGGCTAATACATCTCATCAAAACACAACTTCAGAGGCTTCTAACAAGCAAGATATCAGGAGCATTGTTCAACAAGCAATGAATGATTATCAGAGAGATGATTCTGTGGATACTGTACATTATTTAAACCATAAGAATTGCAAGTCTATTATCAAGAATGAAGCCACCGAGGTTTTGTCGATTGATGGAGCAGACGAAGATTGTATGATAATTCCAAATCCTGAGGGTTGCTATCAAACTTTTGAAACAATTGATAGTGAAGATGAGAACCATGGGTTGCATCCATTTAATGATGACCCTGTGTTCCGATGGAAGCTCATCATCACTGAAGCCTATGCAAACACAGCCAAGCTGCAAGTTTTGCATATTCCACAGGAAACTGTTAAGCATGTTCTTAAGAATAGGAAGAGCATTGTAATTAGAACTCCACACAATTTGGATGGAACAGAGTGCACTATAATCACTTACAAAAGAAAACCAGGGAAGATAGAAATGTATCTAAGCAAGGGTTGGTTTGAGTTTATGAAGGCTAACAAACTCAAAGAGGGAGATGTAGTGATTAGACCTAAGTTTGATTTTGTAATGATTAGACCTAAGTTTGGATCTACACATCTTAATATTTGTGTTTAG 630 0.3683 MANTSHQNTTSEASNKQDIRSIVQQAMNDYQRDDSVDTVHYLNHKNCKSIIKNEATEVLSIDGADEDCMIIPNPEGCYQTFETIDSEDENHGLHPFNDDPVFRWKLIITEAYANTAKLQVLHIPQETVKHVLKNRKSIVIRTPHNLDGTECTIITYKRKPGKIEMYLSKGWFEFMKANKLKEGDVVIRPKFDFVMIRPKFGSTHLNICV 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06022 209 Pfam B3 DNA binding domain 117 187 IPR003340 GO:0003677
Trre1g06022 209 CDD B3_DNA 121 209 IPR003340 GO:0003677
Trre1g06022 209 SUPERFAMILY DNA-binding pseudobarrel domain 101 187 IPR015300 -
Trre1g06022 209 Gene3D - 93 196 IPR015300 -
Trre1g06022 209 ProSiteProfiles B3 DNA-binding domain profile. 106 209 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06022 Trre-Chr1 64466962 64471183 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g06022 B3 1.5e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06022 - K13506 tpra:123909626 108.997