Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06016 ATGAAATTGAGTTGCAATGGATGTCGCGTACTTCGCAGAGGATGCAATGATGACTGCATCATCAAACCATGCCTTGAGTGGATCAATTCCCCTGAAGCCCAAGGCAATGCCACCCTCTTCCTTGCCAAGTTCTATGGTCGAATTGGCTTGCTCAACCTCCTTACTAACGCTACCGGTCAAAATGCCCAAGCTGTGTTCAAGTCATTGTTGTACGAGGCTGCAGGTAGATTGGTGAATCCCACACATGGGGCACTAGGTTTATTTTGGACAGGACAATGGAGCCGATGTGAAACTGCAGTTGAAGCCGTGCTGAGCGGATCAAATATTAATGATGTTTCATTTGTTGATGGGCAGACATCATCAGGCACACTTATTTCTGAAAATCATGTTCTTCCAACAACCTCTAATATACGCCATGTGGCAAGAGGTACCAATGTGGACATCAAAGAGAAAACTCAATTCAAGAGAGCTGGATCAACTTTCAAGCCTAAGCCTCGAGTTGGTTTGCCTGAAAATACTACACTTTTGAAATCAATTTTGGACAATGGAAACGTGAAAAATGCTGAGGCTTCATCGATGATTGATAAAGAGGTGAATGGAGTTGCTGAAACTCAATTGAACTTGGAACTCACTCTTGGCTTCAACGGCCAATCAAACAAGGGCAAAAAAATCATATGA 678 0.4336 MKLSCNGCRVLRRGCNDDCIIKPCLEWINSPEAQGNATLFLAKFYGRIGLLNLLTNATGQNAQAVFKSLLYEAAGRLVNPTHGALGLFWTGQWSRCETAVEAVLSGSNINDVSFVDGQTSSGTLISENHVLPTTSNIRHVARGTNVDIKEKTQFKRAGSTFKPKPRVGLPENTTLLKSILDNGNVKNAEASSMIDKEVNGVAETQLNLELTLGFNGQSNKGKKII 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06016 225 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Trre1g06016 225 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 177 - -
Trre1g06016 225 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06016 Trre-Chr1 64436962 64438134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06016 1 142 AS2 family AT1G68510 52.083 2.59e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre1g06016 LOB 6.6e-21 No_clan