Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06007 ATGGATATTATGGTTACAACAGTTACAGGTTATAAGGAAAAGGAAGGCGGCGAAGATGATGATGATGATAGAAAAGATGGGAAGGTATATGAATGTAGATTTTGTTCCCTCAAATTCTGCAAGTCACAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAGAAAGAAACAGAGAAATTGAACAATGCTCGTCAGCTGCTCTTACGTAATGATCATAATCTTGTTGCTCAAGCTGCTCTTCACCTAGGATGTTATCCACCAATAGCAACAACAGCAGGGTATAATCCAGCAGGTAACATAGGAGATTATCATCATCACCCAACAATGCCTCTAAGATTCCCAACATCCTTCTCTGCATTATCTGGTTCATCATCCTCAATCCACGTACCACCACCACCACAATCATCTCAAGTTCAACAATATTTATATGCTTCACCTTCAAGGCCCACCATGTCTTTCCCTACACATTTGATTCCTCAGCATCATCAAATAAATGATTACCACCGTATGACTCATCATGTTATGAGTAACAACAACAGCCACCACAACATGAACTATGTTGCTGCAGGTGCAAGTGGCGGTGAGTCAAGTTACACGTGCATAGGTGCACCAGTTGGACAAGGTGGTTTTCCAGATAATCCTTCAACGATCAATCGGTTTCAAGAGTGA 672 0.4241 MDIMVTTVTGYKEKEGGEDDDDDRKDGKVYECRFCSLKFCKSQALGGHMNRHRQEKETEKLNNARQLLLRNDHNLVAQAALHLGCYPPIATTAGYNPAGNIGDYHHHPTMPLRFPTSFSALSGSSSSIHVPPPPQSSQVQQYLYASPSRPTMSFPTHLIPQHHQINDYHRMTHHVMSNNNSHHNMNYVAAGASGGESSYTCIGAPVGQGGFPDNPSTINRFQE 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06007 223 Gene3D Classic Zinc Finger 19 82 - -
Trre1g06007 223 Coils Coil 51 71 - -
Trre1g06007 223 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Trre1g06007 223 PANTHER ZINC FINGER PROTEIN JAGGED 24 209 IPR045320 GO:0003700
Trre1g06007 223 FunFam Zinc finger protein STAMENLESS 1 7 78 - -
Trre1g06007 223 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Trre1g06007 223 MobiDBLite consensus disorder prediction 1 24 - -
Trre1g06007 223 SUPERFAMILY beta-beta-alpha zinc fingers 27 58 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06007 Trre-Chr1 64357830 64359876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06007 25 209 C2H2 Transcription Factor Family AT1G13400 41.935 5.99e-31 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06007 - - tpra:123900543 340.887