Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06006 ATGCTCTTATATTCCTTTGTATCATATCACTTGGTTTCTCAATCTCAAACTGAAAGTCTCACAAATTTTGTAAAAAACTCTAGTTTTATCTTCTCTTCTAAAAGAAAAAAAGAAAGGGTTGTTTATCTCATATCATTTTTATTTTCTCACTTCTTCCTGTCTCTCTCTGTCGGTACCATCATGAGACCACAAGGAAATCCATTAGATCTTAACAATTTGCCTGATGAATACTCTAGAGATCATGGTAAACAAGTTCTTGAAGACACTGATCCACCCGGTTGCATCAGGAAAAAGAAAAACGGCGGGAAGGATGGAAAAGAAGAGTGTGGGAAGGTGTATGAATGTAGATTTTGTTCCCTCAAGTTCTGTAAATCTCAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAGAGGGAAACTGAGACGCTTAACCATGCTCGTCAGCTAGTCTTCCGTAACGATCATACCCAGCTTGCACCACAACCACCTCCCTCTCACCTTGTAGGATGTTGTCCACCACCACCAATTGCAACAGGAGGTTACGTTCAAGCAAATAACATGGGAGATCCAACAATGCCTCTAAGATTCCCAAGATATTTCTCAGGCTCATCTTCCTCAAATCATATTCCTCCTCCACCGCCGCCGCCACCACAACAAACTCAGCCATATCTGTACACTTCACCTTCACGACCGGTGTCTTTTCCGACACATTTAATTCCTCAGCATCCGATGAACGAGTACCATGTCGGTCATGTGATGAGTAGCAACCACCACCAACAATATGGAGGACTCCAACACATGAACTATGTTGGTGGAGGTGGTGGTGAGTCAAATTACACATGCATAGGTGCACCGGTTGGACAAGGTTTTGTTCCGGGAAGTGGTGGCGCCGAGAAAGGTCAAAATCATCATCATCAACAACAACATCAGGATCAAGATGGAACTTTGAATTGGGGAAGGAGTACCACCTACTCAGGAACACAGCATCGTTTGGATAATCATAATTCAGCGATCAATCGGTTTCAAGATGGCTTCTAA 1041 0.4352 MLLYSFVSYHLVSQSQTESLTNFVKNSSFIFSSKRKKERVVYLISFLFSHFFLSLSVGTIMRPQGNPLDLNNLPDEYSRDHGKQVLEDTDPPGCIRKKKNGGKDGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDHTQLAPQPPPSHLVGCCPPPPIATGGYVQANNMGDPTMPLRFPRYFSGSSSSNHIPPPPPPPPQQTQPYLYTSPSRPVSFPTHLIPQHPMNEYHVGHVMSSNHHQQYGGLQHMNYVGGGGGESNYTCIGAPVGQGFVPGSGGAEKGQNHHHQQQHQDQDGTLNWGRSTTYSGTQHRLDNHNSAINRFQDGF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06006 346 PANTHER ZINC FINGER PROTEIN JAGGED 85 333 IPR045320 GO:0003700
Trre1g06006 346 MobiDBLite consensus disorder prediction 208 223 - -
Trre1g06006 346 MobiDBLite consensus disorder prediction 198 223 - -
Trre1g06006 346 MobiDBLite consensus disorder prediction 294 336 - -
Trre1g06006 346 SUPERFAMILY beta-beta-alpha zinc fingers 111 141 IPR036236 -
Trre1g06006 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Trre1g06006 346 MobiDBLite consensus disorder prediction 312 336 - -
Trre1g06006 346 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
Trre1g06006 346 FunFam Zinc finger protein STAMENLESS 1 90 160 - -
Trre1g06006 346 Gene3D Classic Zinc Finger 96 161 - -
Trre1g06006 346 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06006 Trre-Chr1 64343416 64346149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06006 64 290 C2H2 Transcription Factor Family AT1G13400 41.880 2.10e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06006 - - aprc:113871902 346.665