Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g06004 ATGGGAAAAAAAGAAAGGGTTGTTTATCTCATATCATTTTTATTTTCTCACTTCTTCCTGTCTCTCTCTGTCGGTACCATCATGAGACCACAAGGAAATCCATTAGATCTTAACAATTTGCCTGATGAATACTCTAGAGATCATGGTAAACAAGTTCTTGAAGACACTGATCCACCCGGTTGCATCAGGAAAAAGAAAAACGGCGGGAAGGATGGAAAAGAAGAGTGTGGGAAGGTGTATGAATGTAGATTTTGTTCCCTCAAGTTCTGTAAATCTCAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAGAGGGAAACTGAGACGCTTAACCATGCTCGTCAGCTAGTCTTCCGTAACGATCATACCCAGCTTGCACCACAACCACCTCCCTCTCACCTTGTAGGATGTTGTCCACCACCACCAATTGCAACAGGAGGTTACGTTCAAGCAAATAACATGGGAGATCCAACAATGCCTCTAAGATTCCCAAGATATTTCTCAGGCTCATCTTCCTCAAATCATATTCCTCCTCCACCGCCGCCGCCACCACAACAAACTCAGCCATATCTGTACACTTCACCTTCACGACCGGTGTCTTTTCCGACACATTTAATTCCTCAGCATCCGATGAACGAGTACCATGTCGGTCATGTGATGAGTAGCAACCACCACCAACAATATGGAGGACTCCAACACATGAACTATGTTGGTGGAGGTGGTGGTGAGTCAAATTACACATGCATAGGTGCACCGGTTGGACAAGGTTTTGTTCCGGGAAGTGGTGGCGCCGAGAAAGGTCAAAATCATCATCATCAACAACAACATCAGGATCAAGATGGAACTTTGAATTGGGGAAGGAGTACCACCTACTCAGGAACACAGCATCGTTTGGATAATCATAATTCAGCGATCAATCGGTTTCAAGATGGCTTCTAA 942 0.4522 MGKKERVVYLISFLFSHFFLSLSVGTIMRPQGNPLDLNNLPDEYSRDHGKQVLEDTDPPGCIRKKKNGGKDGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDHTQLAPQPPPSHLVGCCPPPPIATGGYVQANNMGDPTMPLRFPRYFSGSSSSNHIPPPPPPPPQQTQPYLYTSPSRPVSFPTHLIPQHPMNEYHVGHVMSSNHHQQYGGLQHMNYVGGGGGESNYTCIGAPVGQGFVPGSGGAEKGQNHHHQQQHQDQDGTLNWGRSTTYSGTQHRLDNHNSAINRFQDGF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g06004 313 SUPERFAMILY beta-beta-alpha zinc fingers 78 108 IPR036236 -
Trre1g06004 313 MobiDBLite consensus disorder prediction 49 68 - -
Trre1g06004 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Trre1g06004 313 MobiDBLite consensus disorder prediction 261 298 - -
Trre1g06004 313 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Trre1g06004 313 Gene3D Classic Zinc Finger 63 128 - -
Trre1g06004 313 MobiDBLite consensus disorder prediction 166 190 - -
Trre1g06004 313 MobiDBLite consensus disorder prediction 175 190 - -
Trre1g06004 313 FunFam Zinc finger protein STAMENLESS 1 57 127 - -
Trre1g06004 313 PANTHER ZINC FINGER PROTEIN JAGGED 58 300 IPR045320 GO:0003700
Trre1g06004 313 MobiDBLite consensus disorder prediction 279 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g06004 Trre-Chr1 64343416 64347077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g06004 31 257 C2H2 Transcription Factor Family AT1G13400 41.880 1.45e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g06004 - - aprc:113871902 346.665