Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05995 ATGAACACCAATAGAACTATAGCTATGTCCACAGCTACAAAGAGAGAATTTGGTAGCAATGAAGAAAATGAGCTTAGAAGAGGACCATGGACTCTTGAAGAAGATAGTTTACTAATACACTATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGACTGGAAAAAGCTGCAGACTTAGATGGTTGAATTACTTGAAACCTGACATTAAGAGAGGGAATCTTTCTCCTCAAGAACAGTTGTTGATCCTTGAACTTCATTCAAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAACATCTACCAGGAAGAACAGATAATGAGATAAAGAACTATTGGAGAACAAGGGTGCAAAAACAAGCGCGGCAACTTAACATTGAATCTGGTAGCCAGAGATTCCTTGATGCTGTTAAGTGTTTTTGGATGCCAAGATTACTTCAAAAGATGGAACAGAACACTTCACCAATCTCTGATCACTCTTCTATCACAAACATGAATAATTTTGGAAATTCTTTTGAAGCTTCAACTAGTACTAATTCAATCTCAACAAGCTTCAATATTCCTTCTATATCTTCATCATCTCATGCACAAAGAGGATTCATAGATGCTTCAAGTACAAATCATTTAAATGATATCTCAACATGCTTCAATAATCCTTCTTTGGATTTCATGCAATTTTCACAGCCACTTGAAATTTCAGGAAACTCAAAAAGTGCTCCAAATGTGTTAGAAAACAATGTTCATTATAACTGTCCAATTCAGGACAATTACTATATTGATGATACCAATAACTATGGCTTGGAAGGTCTAAACTTTGATACATCTTCTTCAATGGAAACTTATGACTATTCACAGTTTGATTTTCAAACTTCAGAGAGTGGTTGGATGTTGGATAACATGGCTAATAGTACTTTGTGGAACATGGATACTATGTGA 960 0.3594 MNTNRTIAMSTATKREFGSNEENELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLSPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSQRFLDAVKCFWMPRLLQKMEQNTSPISDHSSITNMNNFGNSFEASTSTNSISTSFNIPSISSSSHAQRGFIDASSTNHLNDISTCFNNPSLDFMQFSQPLEISGNSKSAPNVLENNVHYNCPIQDNYYIDDTNNYGLEGLNFDTSSSMETYDYSQFDFQTSESGWMLDNMANSTLWNMDTM 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05995 319 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 42 51 IPR001345 GO:0003824
Trre1g05995 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Trre1g05995 319 FunFam MYB transcription factor 83 125 - -
Trre1g05995 319 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Trre1g05995 319 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Trre1g05995 319 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Trre1g05995 319 SMART sant 26 76 IPR001005 -
Trre1g05995 319 SMART sant 79 127 IPR001005 -
Trre1g05995 319 CDD SANT 84 123 IPR001005 -
Trre1g05995 319 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 21 199 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre1g05995 319 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Trre1g05995 319 FunFam Myb transcription factor 27 79 - -
Trre1g05995 319 Gene3D - 84 125 - -
Trre1g05995 319 Gene3D - 24 80 - -
Trre1g05995 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Trre1g05995 319 SUPERFAMILY Homeodomain-like 25 121 IPR009057 -
Trre1g05995 319 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05995 Trre-Chr1 64240617 64242087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05995 22 265 MYB Transcription Factor Family AT1G68320 53.612 2.13e-87 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre1g05995 Myb_DNA-binding 3.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05995 K09422 - gmx:100780759 446.432