Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05985 ATGGGTTCAAAGATGGAAGGAACCTCTACACCAGCAATTCGACGTGATCCTTACGAAGTTTTGTCTGTTTCAAAGGAATCAACCGACCAGGAAATTAAAACCGCTTATAGAAAGCTTGCTCTCAAGTATCACCCTGACAAAAATGCCAGCAATCCTGAAGCTTCGGAACTATTCAAAGAGGTTGCATATTCTTATAGTATCTTATCTGACCCAGAGAAGAGAAGGCAGTATGATAGTGCAGGATTTGAGGCACTTGATGCTGATAGCATGGACATGGAAATAGATTTATCTAATCTTGGGACTGTGAACACGATGTTTGCAGCTTTATTCAGCAAGCTGGGTGTCCCTATCAAGACTACCATTTCAGCTAATGTTCTTGAAGAAGCTTTGAATGGCACAGTTACAGTCAGACCCCTTCCAATTGGAACATCAGTTAGTGGAAAGGTAGAGAAGCAATGTGCTCATTTTTTTGGTGTGACAATAAATGAGCAGCAAGCTGAGTCAGGGATTGTAGTAAGAGTTACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTATTTTGAACAAGATGCAAATGCTGGCTATGGTTTGGCTTTGCAGGAAGATAGTGAGAAGACTGGCAAGGTGACATCTGCAGGAATGTATTTCTTACATTTTCAAGTGTACAGAATGGATTCAACTGTGAATGCGTTAGCAATGGCCAAGGATCCTGAAGGGGCTTTCTTTAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTCTCAGAATTAAAGCCTGGCACACATATATTTGCTGTTTATGGAGATAACTTCTTTAAGACTGCTAGCTATACAATTGAAGCAGTATGTGCAAAGTCACATGAAGATACCACCCAAAAACTTCAGGACATTGAGGCTCAAATTTTAAGAAAGAGGAATGAGCTACGCCAATTTGAATCAGAATATAGAAAGGCATTGGCACGCTATCAGGAAGTGACAGAAAGATATACAAAAGAAAAACAGTCGGTAGACGAGCTTCTGAAACAAAGGGACGGTATCCACTCTACCTTTACCATTGTTAAGCCATCCAATATTAGTGCAAGTGGTAGTAATTTAAGCAATGGAAGTTCGAGCAAAATTTCTGGTGAAGATTCCAAAGGTGAGAGCCCTGGGGAAGATGGAGGGTCAGATGGAAAGGATAAATCAGGCAAAAAGAAATGGTTCAACCTTAATCTTAAGGGTTCGGGCTCGGGTTCTGCTGATAAGAAGTTTATTTAA 1254 0.4059 MGSKMEGTSTPAIRRDPYEVLSVSKESTDQEIKTAYRKLALKYHPDKNASNPEASELFKEVAYSYSILSDPEKRRQYDSAGFEALDADSMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTINEQQAESGIVVRVTSTAQSKFKLLYFEQDANAGYGLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNALAMAKDPEGAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTASYTIEAVCAKSHEDTTQKLQDIEAQILRKRNELRQFESEYRKALARYQEVTERYTKEKQSVDELLKQRDGIHSTFTIVKPSNISASGSNLSNGSSSKISGEDSKGESPGEDGGSDGKDKSGKKKWFNLNLKGSGSGSADKKFI 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05985 417 ProSiteProfiles dnaJ domain profile. 16 81 IPR001623 -
Trre1g05985 417 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Trre1g05985 417 Pfam DnaJ domain 16 78 IPR001623 -
Trre1g05985 417 Gene3D DnaJ domain 2 98 IPR036869 -
Trre1g05985 417 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 3 407 - -
Trre1g05985 417 MobiDBLite consensus disorder prediction 377 399 - -
Trre1g05985 417 MobiDBLite consensus disorder prediction 360 376 - -
Trre1g05985 417 FunFam Chaperone protein dnaJ 16 1 98 - -
Trre1g05985 417 CDD DnaJ 16 70 IPR001623 -
Trre1g05985 417 SMART dnaj_3 15 73 IPR001623 -
Trre1g05985 417 PRINTS DnaJ domain signature 73 92 IPR001623 -
Trre1g05985 417 PRINTS DnaJ domain signature 36 51 IPR001623 -
Trre1g05985 417 PRINTS DnaJ domain signature 18 36 IPR001623 -
Trre1g05985 417 PRINTS DnaJ domain signature 53 73 IPR001623 -
Trre1g05985 417 Coils Coil 286 341 - -
Trre1g05985 417 MobiDBLite consensus disorder prediction 360 417 - -
Trre1g05985 417 MobiDBLite consensus disorder prediction 1 25 - -
Trre1g05985 417 SUPERFAMILY Chaperone J-domain 15 86 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05985 Trre-Chr1 64138069 64142293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05985 7 88 C2H2 Transcription Factor Family AT1G74250 43.678 5.99e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05985 - - tpra:123901008 723.391