Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre1g05980 | ATGGCGTCAACACTCTCTCCCTACATTCTTCTTCTTTTGTTTTCCCATTTTGTCCTCATTGTTCAATCTTCAACAAACCCAGATTTACAACCTCTTCTATCTTTTAAAACATCTTCAGACCCATCCAATATGCTCACAACTTGGAAAACCGGAACTGACCCATGCACTTGGACCGGTGTTTCATGCGTCAAAAACCGAGTCACTCGACTCGTTCTAGAAAATCTCAACCTACAAGGTTCCATTGAACCGTTAACTTCTTTAACTCAGCTCCGAGTTTTAAGTCTCAAAGGAAACCGGTTTTCCGGTTCAGTTCCGAGTCTCTCCAGCTTCACTTCTCTTAAGCTTCTCTTCTTATCTAACAACCGTTTCTCCGGCGAGTTCCCGTCGACGGTAACATCACTTTTCCGTCTATACCGTCTCGATCTGTCAAATAACAACTTCTCCGGCGAGATTCCGGCGACTGTCAACCGTTTAACTCACCTCCTCACTCTCCGTCTCAACGACAATCATTTCTCCGGTCTCATTCCTGAACTTCACCTTCCTTGTTTACAAGACTTCAACGTCTCCGGTAACGTTCTCTCCGGTGAGATACCGGAATCATTATCGGCTTTCTCCGATTCATCTTTCGGGCAAAACCCATTTCTCTGTGGAGCTCCGTTGAAGAAATGTGAAGCCGAACCGAGCAAACCGGGTTCCGAAGGTGCCATTGCTTCACCATTGGTACCAAGTAGTAGAATTCCAACAGTTTCATCTTCACCAAGCACAATGCCAACAACAAAACCAACAACAAACGTTAAAAGCCATGAAAAAAGAGGTTCTAAAATGAGTCCTATGGTTTTGATAGCTATAATAGTTGGTGATGTTCTTGTTCTAGGAATAGTGTGTTTGCTTCTTTATTGCTATTTTTGGAGAAACTATTCTTCAAAATCAAAGAAAGAAAAAGGGTTGAAACTATTTGAGACTGAAAAGATAGTTTATTCTTCAAGTCCATACCCTACACAAGGAGGGTTTGAGAGGGGTAGAATGGTATTTTTTGAAGGAGAGAAGAGATTTGAACTTGAGGATTTGTTACGTGCTTCAGCTGAAATGCTTGGGAAAGGTGGATTTGGAACTGCTTATAAAGCTGTTCTTGATGATGGAAATGTTGTTGCTGTCAAGAGATTGAAAGATGCACAGATTGCAGGGAAGAGAGAATTTGAACAGCATATGGAAGTTCTTGGAAGGATTAGGCATCCAAATGTTGTTAGCTTAAGGGCTTATTATTTTGCAAGAGAAGAGAAGCTTTTAGTTTATGATTACATGCCTAATGCAACTTTGTTCTGGCTTCTTCATGGAAACAGAGGGCCAGGAAGAACCCCACTGGATTGGACCACAAGGCTCAAGATAGCAGCTGGAGCTGCAAAAGGAGTAACTTTCATTCACAACTCGTGCAAATCCCTTAAACTCACCCATGGTAACATTAAATCCACCAACATACTCCTTGACAAGCAAGGAAATGCACGAGTATCGGATTTTGGGCTTTCAATTTTCAACGGTCCAAACCCGTCAGGAGGAGCTGGTAGCAGACCTAACGGATACCGTGCTCCTGAGGTTTTGGACGGTCGAAAACAATCCCAAAAATCGGATGTGTACTCTTTCGGTGTTCTGTTGCTAGAGATGCTGACAGGAAAGTGTCCGTCTGCTGGGGAGAGTGGTGGAAGTGGTTATGGTGGGGGTGTGATTGATCTACCTAGGTGGGTGCAATCAGTAGTTAGAGAGGAATGGACTGCTGAAGTTTTTGATTTGGAGTTGATGAGGTATAAGGATATTGAAGAGGAAATGGTTGGGTTGCTTCAGATTGCTATGTCTTGTACTGCTGCTTCACCTGATCAACGGCCAAGGATGTCACACGTTGTTAAGATGATTGAGGACTTGCGTGGGGTCGAGGTGTCTCCCTGTCATGACACCACAGAATCTGTCTCTGATTCACCTTCATTGTCTGAAGATGCCTGTGCTGGTACTACTAGTCAGTAA | 2013 | 0.4342 | MASTLSPYILLLLFSHFVLIVQSSTNPDLQPLLSFKTSSDPSNMLTTWKTGTDPCTWTGVSCVKNRVTRLVLENLNLQGSIEPLTSLTQLRVLSLKGNRFSGSVPSLSSFTSLKLLFLSNNRFSGEFPSTVTSLFRLYRLDLSNNNFSGEIPATVNRLTHLLTLRLNDNHFSGLIPELHLPCLQDFNVSGNVLSGEIPESLSAFSDSSFGQNPFLCGAPLKKCEAEPSKPGSEGAIASPLVPSSRIPTVSSSPSTMPTTKPTTNVKSHEKRGSKMSPMVLIAIIVGDVLVLGIVCLLLYCYFWRNYSSKSKKEKGLKLFETEKIVYSSSPYPTQGGFERGRMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQIAGKREFEQHMEVLGRIRHPNVVSLRAYYFAREEKLLVYDYMPNATLFWLLHGNRGPGRTPLDWTTRLKIAAGAAKGVTFIHNSCKSLKLTHGNIKSTNILLDKQGNARVSDFGLSIFNGPNPSGGAGSRPNGYRAPEVLDGRKQSQKSDVYSFGVLLLEMLTGKCPSAGESGGSGYGGGVIDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMSCTAASPDQRPRMSHVVKMIEDLRGVEVSPCHDTTESVSDSPSLSEDACAGTTSQ | 670 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre1g05980 | 670 | Pfam | Protein kinase domain | 362 | 633 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre1g05980 | 670 | MobiDBLite | consensus disorder prediction | 645 | 670 | - | - | |
Trre1g05980 | 670 | MobiDBLite | consensus disorder prediction | 243 | 263 | - | - | |
Trre1g05980 | 670 | FunFam | pollen receptor-like kinase 1 | 331 | 433 | - | - | |
Trre1g05980 | 670 | MobiDBLite | consensus disorder prediction | 227 | 270 | - | - | |
Trre1g05980 | 670 | MobiDBLite | consensus disorder prediction | 647 | 670 | - | - | |
Trre1g05980 | 670 | ProSitePatterns | Protein kinases ATP-binding region signature. | 364 | 396 | IPR017441 | GO:0005524 | |
Trre1g05980 | 670 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 8 | 434 | 645 | - | - | |
Trre1g05980 | 670 | SUPERFAMILY | Protein kinase-like (PK-like) | 362 | 635 | IPR011009 | - | |
Trre1g05980 | 670 | Pfam | Leucine rich repeat N-terminal domain | 26 | 62 | IPR013210 | - | |
Trre1g05980 | 670 | Gene3D | Ribonuclease Inhibitor | 85 | 230 | IPR032675 | - | |
Trre1g05980 | 670 | Gene3D | Ribonuclease Inhibitor | 21 | 84 | IPR032675 | - | |
Trre1g05980 | 670 | FunFam | Leucine-rich repeat receptor-like protein kinase | 25 | 177 | - | - | |
Trre1g05980 | 670 | ProSiteProfiles | Protein kinase domain profile. | 358 | 638 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre1g05980 | 670 | SUPERFAMILY | L domain-like | 38 | 221 | - | - | |
Trre1g05980 | 670 | Gene3D | Phosphorylase Kinase; domain 1 | 338 | 433 | - | - | |
Trre1g05980 | 670 | CDD | STKc_IRAK | 364 | 638 | - | - | |
Trre1g05980 | 670 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 | 11 | 640 | IPR046959 | - | |
Trre1g05980 | 670 | Gene3D | Transferase(Phosphotransferase) domain 1 | 434 | 654 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre1g05980 | Trre-Chr1 | 64112761 | 64116051 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre1g05980 | 28 | 670 | Receptor kinase-like Gene Family | AT1G68400 | 66.313 | 0.0 | 820 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-III | Trre1g05980 | Pkinase | 2.2e-37 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre1g05980 | - | - | cam:105851082 | 1075.46 |