Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05980 ATGGCGTCAACACTCTCTCCCTACATTCTTCTTCTTTTGTTTTCCCATTTTGTCCTCATTGTTCAATCTTCAACAAACCCAGATTTACAACCTCTTCTATCTTTTAAAACATCTTCAGACCCATCCAATATGCTCACAACTTGGAAAACCGGAACTGACCCATGCACTTGGACCGGTGTTTCATGCGTCAAAAACCGAGTCACTCGACTCGTTCTAGAAAATCTCAACCTACAAGGTTCCATTGAACCGTTAACTTCTTTAACTCAGCTCCGAGTTTTAAGTCTCAAAGGAAACCGGTTTTCCGGTTCAGTTCCGAGTCTCTCCAGCTTCACTTCTCTTAAGCTTCTCTTCTTATCTAACAACCGTTTCTCCGGCGAGTTCCCGTCGACGGTAACATCACTTTTCCGTCTATACCGTCTCGATCTGTCAAATAACAACTTCTCCGGCGAGATTCCGGCGACTGTCAACCGTTTAACTCACCTCCTCACTCTCCGTCTCAACGACAATCATTTCTCCGGTCTCATTCCTGAACTTCACCTTCCTTGTTTACAAGACTTCAACGTCTCCGGTAACGTTCTCTCCGGTGAGATACCGGAATCATTATCGGCTTTCTCCGATTCATCTTTCGGGCAAAACCCATTTCTCTGTGGAGCTCCGTTGAAGAAATGTGAAGCCGAACCGAGCAAACCGGGTTCCGAAGGTGCCATTGCTTCACCATTGGTACCAAGTAGTAGAATTCCAACAGTTTCATCTTCACCAAGCACAATGCCAACAACAAAACCAACAACAAACGTTAAAAGCCATGAAAAAAGAGGTTCTAAAATGAGTCCTATGGTTTTGATAGCTATAATAGTTGGTGATGTTCTTGTTCTAGGAATAGTGTGTTTGCTTCTTTATTGCTATTTTTGGAGAAACTATTCTTCAAAATCAAAGAAAGAAAAAGGGTTGAAACTATTTGAGACTGAAAAGATAGTTTATTCTTCAAGTCCATACCCTACACAAGGAGGGTTTGAGAGGGGTAGAATGGTATTTTTTGAAGGAGAGAAGAGATTTGAACTTGAGGATTTGTTACGTGCTTCAGCTGAAATGCTTGGGAAAGGTGGATTTGGAACTGCTTATAAAGCTGTTCTTGATGATGGAAATGTTGTTGCTGTCAAGAGATTGAAAGATGCACAGATTGCAGGGAAGAGAGAATTTGAACAGCATATGGAAGTTCTTGGAAGGATTAGGCATCCAAATGTTGTTAGCTTAAGGGCTTATTATTTTGCAAGAGAAGAGAAGCTTTTAGTTTATGATTACATGCCTAATGCAACTTTGTTCTGGCTTCTTCATGGAAACAGAGGGCCAGGAAGAACCCCACTGGATTGGACCACAAGGCTCAAGATAGCAGCTGGAGCTGCAAAAGGAGTAACTTTCATTCACAACTCGTGCAAATCCCTTAAACTCACCCATGGTAACATTAAATCCACCAACATACTCCTTGACAAGCAAGGAAATGCACGAGTATCGGATTTTGGGCTTTCAATTTTCAACGGTCCAAACCCGTCAGGAGGAGCTGGTAGCAGACCTAACGGATACCGTGCTCCTGAGGTTTTGGACGGTCGAAAACAATCCCAAAAATCGGATGTGTACTCTTTCGGTGTTCTGTTGCTAGAGATGCTGACAGGAAAGTGTCCGTCTGCTGGGGAGAGTGGTGGAAGTGGTTATGGTGGGGGTGTGATTGATCTACCTAGGTGGGTGCAATCAGTAGTTAGAGAGGAATGGACTGCTGAAGTTTTTGATTTGGAGTTGATGAGGTATAAGGATATTGAAGAGGAAATGGTTGGGTTGCTTCAGATTGCTATGTCTTGTACTGCTGCTTCACCTGATCAACGGCCAAGGATGTCACACGTTGTTAAGATGATTGAGGACTTGCGTGGGGTCGAGGTGTCTCCCTGTCATGACACCACAGAATCTGTCTCTGATTCACCTTCATTGTCTGAAGATGCCTGTGCTGGTACTACTAGTCAGTAA 2013 0.4342 MASTLSPYILLLLFSHFVLIVQSSTNPDLQPLLSFKTSSDPSNMLTTWKTGTDPCTWTGVSCVKNRVTRLVLENLNLQGSIEPLTSLTQLRVLSLKGNRFSGSVPSLSSFTSLKLLFLSNNRFSGEFPSTVTSLFRLYRLDLSNNNFSGEIPATVNRLTHLLTLRLNDNHFSGLIPELHLPCLQDFNVSGNVLSGEIPESLSAFSDSSFGQNPFLCGAPLKKCEAEPSKPGSEGAIASPLVPSSRIPTVSSSPSTMPTTKPTTNVKSHEKRGSKMSPMVLIAIIVGDVLVLGIVCLLLYCYFWRNYSSKSKKEKGLKLFETEKIVYSSSPYPTQGGFERGRMVFFEGEKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGNVVAVKRLKDAQIAGKREFEQHMEVLGRIRHPNVVSLRAYYFAREEKLLVYDYMPNATLFWLLHGNRGPGRTPLDWTTRLKIAAGAAKGVTFIHNSCKSLKLTHGNIKSTNILLDKQGNARVSDFGLSIFNGPNPSGGAGSRPNGYRAPEVLDGRKQSQKSDVYSFGVLLLEMLTGKCPSAGESGGSGYGGGVIDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVGLLQIAMSCTAASPDQRPRMSHVVKMIEDLRGVEVSPCHDTTESVSDSPSLSEDACAGTTSQ 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05980 670 Pfam Protein kinase domain 362 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05980 670 MobiDBLite consensus disorder prediction 645 670 - -
Trre1g05980 670 MobiDBLite consensus disorder prediction 243 263 - -
Trre1g05980 670 FunFam pollen receptor-like kinase 1 331 433 - -
Trre1g05980 670 MobiDBLite consensus disorder prediction 227 270 - -
Trre1g05980 670 MobiDBLite consensus disorder prediction 647 670 - -
Trre1g05980 670 ProSitePatterns Protein kinases ATP-binding region signature. 364 396 IPR017441 GO:0005524
Trre1g05980 670 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 434 645 - -
Trre1g05980 670 SUPERFAMILY Protein kinase-like (PK-like) 362 635 IPR011009 -
Trre1g05980 670 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Trre1g05980 670 Gene3D Ribonuclease Inhibitor 85 230 IPR032675 -
Trre1g05980 670 Gene3D Ribonuclease Inhibitor 21 84 IPR032675 -
Trre1g05980 670 FunFam Leucine-rich repeat receptor-like protein kinase 25 177 - -
Trre1g05980 670 ProSiteProfiles Protein kinase domain profile. 358 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05980 670 SUPERFAMILY L domain-like 38 221 - -
Trre1g05980 670 Gene3D Phosphorylase Kinase; domain 1 338 433 - -
Trre1g05980 670 CDD STKc_IRAK 364 638 - -
Trre1g05980 670 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 640 IPR046959 -
Trre1g05980 670 Gene3D Transferase(Phosphotransferase) domain 1 434 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05980 Trre-Chr1 64112761 64116051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05980 28 670 Receptor kinase-like Gene Family AT1G68400 66.313 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre1g05980 Pkinase 2.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05980 - - cam:105851082 1075.46