Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05974 ATGTCCTTAGTTTACGGATTTCTGTTTCTTTTGTTTTCACAACTCATGCTGCTACTTGTGTTGGTGGGTGGAGATGAGAGTAAGTACCATGGAGATTGTCCAGCTTCATTTAGCTGTGGATATCTCGGCAATATCAGCTTCCCTTTCACTACAACTGAGCGTCCGGACTGCGGTTTATTGCCAATACCCAATTGTGGTGATGATCCACTGACGCCCAAAATGATCCAATTTAAGAATAAAGGGAAACAATTTGAGTTTCAGGTTGAAATTGTAAGTCCTCTTGAGTTTCGCAGTGGTAATGCTACCTGTAATTGTGTTTTTAGAGACAAAAAACTCTACAATCTGCTGCAAAACAGAAGTTGTGATGCTTTCAGATATAATTATACTCTTCCTCCACCCTCTGATTTCGTTTCCTTTAATATGGAAACTCATGCAACATTGTTCATGTGCAACCGTACTCTCCATGTCAACCCTCCATCATATATGCATAATTATACAAAGTGTCCTCTTAAAGATCTCTACTACCAGCCTTACCACTATGCTGATAATGCTTCTCGGAGTGCTTTTACAGCTTGTACAAATGTTCGGCTTCCGATTAAAGACATTTCCGACAATAATGACCCTTTTACGTTCGTAACTGCTGACATCTCAATTCAAGTAAGCATAACAAAGGAATGTGCATATTGTCACTACAACCAAAGTGGACGGTGCAAGCTTGACAGCACCGGGAGGTTTTATTGTGCCGATGCAGTCATAGTTAGTGAGAAAAAAGGTCTGAGCCGGAATATCAATTTGGGTATAGCCATGGCGGCTATTGGAGTTGCAGTGTTGATGTCGTTGACTTACTGCATAAGGACAAAGATCTTCCCCCCAATGTTTCTTTTGTTCCGGAAGGAGAGTTCAGCCCATCAAATTATTGAGGAGTTTTTGAAGGAACATGGACCTCTTCCAGCTGCTAGATACAGCTATTCAGATGTCAAGAAAATAACAAACTCTTTCAAAAGCAAATTAGGCCAGGGAGGGTACGGAAGTGTATACAAAGGGAAGTTACATGATGAGCGTACTGTTGCAGTGAAGGTTTTAAGTGAATCAAAAGGTGATGGTGAAGATTTCGTTAATGAAGTTGCGAGTATTAGTAGAACTTCACATGTCAACGTTGTTAGACTTTTGGGGTTCTGTTTGGATGGTTCTAAAAAGGCACTAATATATGAATTCATGCCAAATGGATCTCTTGAGAAGTTCATATACGAAGAGAGAAATCCACTAAAAGATGATCACCAATTGGATTGCAAAATATTGTATGATATTGCAGTTGGCGTTGCTCATGGGTTGGAGTACTTGCACAGAGGCTGCAACACTAGAATCTTGCATTTTGACATAAAACCTCATAATATATTACTAGATGATGATTTTTGTCCTAAAATTTCAGATTTTGGACTTGCTAAAATATGTCCAAGAAAAGAAAGCATTGTATCCATATTTGGCGCGAGGGGAACACCAGGATATATTGCTCCAGAATTGTTCTCCCGAAGTTTTGGCGGGGTGTCACATAAATCAGATGTCTACAGTTATGGAATGATGGTTTTAGAAATGGTTGGTCGAAGAAAGAACATCAAAGTTGAATTGGATTGTTCTAGTGAGTTATATTTTCCACATTGGATTTACAAACGTCTTGAATTGAATCAGGATCTTGGATTCAGGTGTATCAAAAATGAAATTGATGAAGAAATGGTAAGAAAAATGACAGTGGTGAGTTTATGGTGCATAAAAACTGACCCTACGCATCGACCGGCAATGCATAAAGCTGTGGAAATGTTGGAAGGGAGTCTTCAAGTGCTGGAAATACCACCCAAGCCCTTTCTGTCTTCTCCTTCAACATCCTCAATCCACTTATCATCTGAAATATTATAA 1911 0.3935 MSLVYGFLFLLFSQLMLLLVLVGGDESKYHGDCPASFSCGYLGNISFPFTTTERPDCGLLPIPNCGDDPLTPKMIQFKNKGKQFEFQVEIVSPLEFRSGNATCNCVFRDKKLYNLLQNRSCDAFRYNYTLPPPSDFVSFNMETHATLFMCNRTLHVNPPSYMHNYTKCPLKDLYYQPYHYADNASRSAFTACTNVRLPIKDISDNNDPFTFVTADISIQVSITKECAYCHYNQSGRCKLDSTGRFYCADAVIVSEKKGLSRNINLGIAMAAIGVAVLMSLTYCIRTKIFPPMFLLFRKESSAHQIIEEFLKEHGPLPAARYSYSDVKKITNSFKSKLGQGGYGSVYKGKLHDERTVAVKVLSESKGDGEDFVNEVASISRTSHVNVVRLLGFCLDGSKKALIYEFMPNGSLEKFIYEERNPLKDDHQLDCKILYDIAVGVAHGLEYLHRGCNTRILHFDIKPHNILLDDDFCPKISDFGLAKICPRKESIVSIFGARGTPGYIAPELFSRSFGGVSHKSDVYSYGMMVLEMVGRRKNIKVELDCSSELYFPHWIYKRLELNQDLGFRCIKNEIDEEMVRKMTVVSLWCIKTDPTHRPAMHKAVEMLEGSLQVLEIPPKPFLSSPSTSSIHLSSEIL 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05974 636 PANTHER RUST RESISTANCE KINASE LR10-RELATED 303 625 IPR045874 GO:0004672
Trre1g05974 636 Gene3D Transferase(Phosphotransferase) domain 1 406 620 - -
Trre1g05974 636 ProSiteProfiles Protein kinase domain profile. 331 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05974 636 Gene3D Phosphorylase Kinase; domain 1 308 405 - -
Trre1g05974 636 FunFam PR5-like receptor kinase 406 618 - -
Trre1g05974 636 SMART serkin_6 331 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05974 636 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Trre1g05974 636 Pfam Protein kinase domain 334 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05974 636 SUPERFAMILY Protein kinase-like (PK-like) 315 607 IPR011009 -
Trre1g05974 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Trre1g05974 636 FunFam serine/threonine-protein kinase PBS1-like 299 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05974 Trre-Chr1 64093881 64096141 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05974 2 636 Receptor kinase-like Gene Family AT5G38260 38.957 2.29e-129 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g05974 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05974 - - tpra:123901115 987.252