Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05972 ATGAACAAAAAAAGCCATTTATTTGTCCTGAATCCCCTCTCTTCTCCCCTAATTTATTCATACATCACCCTTTTCTATTTCTTTACTAGAACCACTCTATGCTTAGTAGATTCAAATTTTACAGCTTGTGTACCCAAAACATGTGGCAACCAAATTATAAGATATCCTTTCTACATCAAAGGAATACAACAACCTCTTTGTGGATACCCTGGTTTTGGTATCTCTTGTGACAATAATCTTGGTTTTCCAATCCTTAATCTTACCAATACCTTTTATATAATTAATGAGATTTTCTATCAAAATCAATCATTAAGAGTTTCAAATGTTGATTTTTCAAGATCAAATGTCAACAAAGGTTGTTTTTCACCTACCCAAAACCTCACTTTTCCAATTAACATGTTCAATGTTGGACAAAACCAAACCCAAGTGATTTTGTTCTTTGGATGTGACTCAACGAAGCTACCCAGAACGCTGCAAAGGAACATAATTGGTTGCTCTGCAGAAAACAAAACGAGTTCGGTTGTGGCATTGTATGGAGATGATAAAAATAGAAGCTTTGTGTCAAAGAATTGCAGAGGTGATGTGGTGTCTGCTATGGTGGAAAATGGTGTAAAAGGAGAGATTGAAGAGTCGCTGAAAAATGGGTTTCGGTTGAAATGGATAGCTGCTGATTGTACTGATTGTTACAACAGTGGAGGGAGGTGTGGTTTTGATTCACGTATATATAGTTTCAGATGTTACTGCACTGACCTAATTCATGCTGCAAAATGTGATCCAGTAAAGTCCCAGTCGGTGCATACAGTGACAATAGTGGGCTCAGTGGCTGGAGTTGCATTTGCCTTGCTGACTGTTTCAGTTTGTTGGTTTAGAAAAAAGATCTTCCCTTCCACATTTCTTTTGTCCAGGAAGAACAATCAAACCCATCAAATTATTGAAAAGTTTGTGAAGGAACATGGACCTCTTCCAGCTGCTAGGTACAGTTATTCAGATATCAAGAAAATAACAGACTCTTTCAAAAACAAATTAGGCCAGGGAGGGTATGGAAGTGTATACAAAGGAAAGCTAAACGACGAGCGTATGGTGGCAGTGAAGGTTTTAAGCGAATCAAAAGGTGATGGTCAAGATTTCATTAATGAAGTTGCAAGTATCAGCAGAACATCACACGTCAATGTAGTTAGACTTATGGGGTTTTGTTTGGATGGTTCTAAAAAAGCGCTAATATATGAATTTATGTCCAATGGATCACTTGAAAAGTTCATATATGAAGAGAAAAATCCATTAAAGAATGATCGCCAATTGGATTGCAAAACATTGTATGATATTTCAGTTGGCATTGCTCGTGGGTTAGGGTATTTGCACAGAGGATGCAACACAAGAATCTTGCATTTTGACATAAAACCTCATAATATATTACTAGATGATGATTTTTGTCCTAAAATTTCAGATTTTGGACTTGCTAAAATATGTCCAAAAAAAGAAAGCATTGTATCCATATTTGGCGCTAGGGGAACACCAGGATATATTGCTCCAGAATTGTTCTCCAGAAACTTTGGCGGGGTGTCACATAAGTCAGATGTTTATAGTTATGGAATGATGGTTTTAGAAATGGTTGGTCGAAGAAAGAACATCAAAGTTGAAGTTGATTGTTCTAGCGAGTTATATTTTCCACACTGGATTTACAAGCGTCTTGAATTGAATCAGGATCTTGGACTCAGATGTATTAAAAATGAAATTGATGAAGAAATGGTTAGAAAAATGACAGTGGTGAGTTTATGGTGCATACAAACTGACCCTTCACATCGACCAGCAATGCATAAAGTTGTGGAAATGCTGAAAGGGAGTCTTCAAGTGCTCGAAATACCACCCAAACCCTTTTTGTCTTCTCCTTCAACATCTTCAACTCATTTATCGTCTGAAATATTGTAA 1926 0.3681 MNKKSHLFVLNPLSSPLIYSYITLFYFFTRTTLCLVDSNFTACVPKTCGNQIIRYPFYIKGIQQPLCGYPGFGISCDNNLGFPILNLTNTFYIINEIFYQNQSLRVSNVDFSRSNVNKGCFSPTQNLTFPINMFNVGQNQTQVILFFGCDSTKLPRTLQRNIIGCSAENKTSSVVALYGDDKNRSFVSKNCRGDVVSAMVENGVKGEIEESLKNGFRLKWIAADCTDCYNSGGRCGFDSRIYSFRCYCTDLIHAAKCDPVKSQSVHTVTIVGSVAGVAFALLTVSVCWFRKKIFPSTFLLSRKNNQTHQIIEKFVKEHGPLPAARYSYSDIKKITDSFKNKLGQGGYGSVYKGKLNDERMVAVKVLSESKGDGQDFINEVASISRTSHVNVVRLMGFCLDGSKKALIYEFMSNGSLEKFIYEEKNPLKNDRQLDCKTLYDISVGIARGLGYLHRGCNTRILHFDIKPHNILLDDDFCPKISDFGLAKICPKKESIVSIFGARGTPGYIAPELFSRNFGGVSHKSDVYSYGMMVLEMVGRRKNIKVEVDCSSELYFPHWIYKRLELNQDLGLRCIKNEIDEEMVRKMTVVSLWCIQTDPSHRPAMHKVVEMLKGSLQVLEIPPKPFLSSPSTSSTHLSSEIL 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05972 641 PANTHER RUST RESISTANCE KINASE LR10-RELATED 308 631 IPR045874 GO:0004672
Trre1g05972 641 SUPERFAMILY Protein kinase-like (PK-like) 320 611 IPR011009 -
Trre1g05972 641 Pfam Protein kinase domain 339 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05972 641 ProSiteProfiles Protein kinase domain profile. 336 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05972 641 Gene3D Phosphorylase Kinase; domain 1 312 410 - -
Trre1g05972 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Trre1g05972 641 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Trre1g05972 641 FunFam serine/threonine-protein kinase PBS1-like 303 410 - -
Trre1g05972 641 FunFam PR5-like receptor kinase 411 623 - -
Trre1g05972 641 Pfam Wall-associated receptor kinase galacturonan-binding 43 107 IPR025287 GO:0030247
Trre1g05972 641 SMART serkin_6 336 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05972 641 Pfam Wall-associated receptor kinase C-terminal 172 250 IPR032872 -
Trre1g05972 641 Gene3D Transferase(Phosphotransferase) domain 1 411 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05972 Trre-Chr1 64077899 64081049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05972 20 638 Receptor kinase-like Gene Family AT5G38260 40.402 2.53e-139 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g05972 Pkinase 8.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05972 - - mtr:11418569 1028.85