Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05971 ATGAACAGAAAAAGCCCTTTGTTTGTCCTGAATCCCCTCTCTTTCCTCCTGATTTATTCATACATCACCCTTTTCTATTTCTTTACCAGAACCACTCTATGCTTGGTAGATTCAAATTTTACAGCTTGTGTACCCAGAACATGTGGCAACCAAACTATAAGATACCCTTTCTACATCAAAGGAATACAAGAACCTTTTTGTGGATACCCTGGTTTTGGTATCACTTGTAACAATAATACTGGTTTTCCAATCTTTAATCTTACCAATACCTTTTACATAATCGACGAGATTTTCTATCAAAATCAATCAATAAGAGTTTCCAATGCTGTTTTTTCAAGATCAAACATCAACAAAGGCTGTCTTTCACCTACCCAAAACCTCACTTTTCCTATTAACATGTTCAATCTTGCGCATAACCAAAACCAAGTGATTTTGTTCTTTGGATGTGACTCAACAAAGCTACCCAGGACGCTGCAAAGGAACACAATTGGTTGCTCTGCAGAAAACAAAACGAGTTCGGTTGTGGCACTGTATGGAGATGATAAAAATGTAAGCTTTGTATCAAAGAATTGCAGAGGTGGTGTGGTGTCTGCTATGGTGGAAAATGGCGTGAAAGGAGAGATTGAAGAGTCGCTGAGAAATGGGTTTCTGTTGAATTGGATAGCTGCTGATTGTCGTGAGTGTTACGACAGTGGAGGGAGGTGTGGTTTTGATTCAGATAAATACAATTTCAGGTGTTACTGTACTAATAGAGTTCATGCTGCAATGTGTGATCCAGTATTGAAGTCCCAGTTGGTTCATACAGTGACAATAGTGGGCTCGGTGGTTGGAGTTGCATTTGCCTTGCTGATTGTCTTAGTTTGTTGGTTTAGGAAAAAGATCTTCCCTCCCACATTTCTTTTGTTCAGGAAGGACAATCCAACCCATCAAATTATTGAGAAGTTTTTGAAGGAGCATGGACCTCTTCCAGCTGCTAGGTATAGTTATTCAGATATCAAGAAAATAACAAACTCTTTCAAAAACAAACTAGGCCAGGGAGGGTATGGAAGTGTATACAAAGGAAAGTTACACAATGAGCGTATGGTGGCAGTGAAGGTTTTAAGCGAATCAAAAGGTGACAGTGAAGATTTCATAAATGAAGTTGCGAGTATCAGTAGAACTTCACATGTTAACGTTGTTAGACTTTTAGGGTTTTGTTTGGATGGTTCTAAAAAGGCACTAGTATACGAATTTATGCCCAATGGATCTCTTGAAAAGTTTATATATGAAGAGAAAGATCCATTAAAGAATGATCGTCAATTGGATTGCAAAACATTGTATGATATTGCAGTAGGCGTTGCTCAAGGGTTAGAGTACTTGCACAAAGGCTGCAACACTAGAATCTTACATTTTGACATAAAACCTCATAATATATTAATAGACGATGATTTCTGTCCAAAAATTTCTGACTTTGGACTTGCTAAAATATGTCCAAGAAAAGAAAGCATTGTATCCATATTTGGCATGAGGGGAACACCAGGATACATTGCTCCAGAATTGTTCTCCCGAAATTTTGGTGGGGTGTCATATAAATCAGATGTCTACAGTTATGGAATGATGGTTTTAGAAATGGTTGGTCAAAAAAAGAACATCAACGTTGAAGTGGATTGTTCCAGCGAATTATATTTTCCACACTGGATTTACAAGCATCTTGAATTGAATCAGGATCTTGGACTCAGGTGTATTAAAAATGAAATTGATGAAGAAATGATAAGAAAAATGACAGTGGTGAGTTTATGGTGCATACAAACTGACCCTAAGAATCGACCAGCAATGCATAAAGTGGTGGAAATGTTGGAAGGGAGCCTTCAAGTGCTGGAAATACCACCAAAACCCTTTATGTCTTCTCCTTCAACATCTTCAATCCATTTATCATCTGAAATATTGTGA 1929 0.3774 MNRKSPLFVLNPLSFLLIYSYITLFYFFTRTTLCLVDSNFTACVPRTCGNQTIRYPFYIKGIQEPFCGYPGFGITCNNNTGFPIFNLTNTFYIIDEIFYQNQSIRVSNAVFSRSNINKGCLSPTQNLTFPINMFNLAHNQNQVILFFGCDSTKLPRTLQRNTIGCSAENKTSSVVALYGDDKNVSFVSKNCRGGVVSAMVENGVKGEIEESLRNGFLLNWIAADCRECYDSGGRCGFDSDKYNFRCYCTNRVHAAMCDPVLKSQLVHTVTIVGSVVGVAFALLIVLVCWFRKKIFPPTFLLFRKDNPTHQIIEKFLKEHGPLPAARYSYSDIKKITNSFKNKLGQGGYGSVYKGKLHNERMVAVKVLSESKGDSEDFINEVASISRTSHVNVVRLLGFCLDGSKKALVYEFMPNGSLEKFIYEEKDPLKNDRQLDCKTLYDIAVGVAQGLEYLHKGCNTRILHFDIKPHNILIDDDFCPKISDFGLAKICPRKESIVSIFGMRGTPGYIAPELFSRNFGGVSYKSDVYSYGMMVLEMVGQKKNINVEVDCSSELYFPHWIYKHLELNQDLGLRCIKNEIDEEMIRKMTVVSLWCIQTDPKNRPAMHKVVEMLEGSLQVLEIPPKPFMSSPSTSSIHLSSEIL 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05971 642 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Trre1g05971 642 SMART serkin_6 337 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05971 642 Pfam Wall-associated receptor kinase galacturonan-binding 43 107 IPR025287 GO:0030247
Trre1g05971 642 SUPERFAMILY Protein kinase-like (PK-like) 321 613 IPR011009 -
Trre1g05971 642 Gene3D Transferase(Phosphotransferase) domain 1 412 627 - -
Trre1g05971 642 Gene3D Phosphorylase Kinase; domain 1 304 411 - -
Trre1g05971 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Trre1g05971 642 Pfam Protein kinase domain 340 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05971 642 Pfam Wall-associated receptor kinase C-terminal 179 250 IPR032872 -
Trre1g05971 642 ProSiteProfiles Protein kinase domain profile. 337 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05971 642 PANTHER RUST RESISTANCE KINASE LR10-RELATED 309 631 IPR045874 GO:0004672
Trre1g05971 642 FunFam serine/threonine-protein kinase PBS1-like 309 411 - -
Trre1g05971 642 FunFam PR5-like receptor kinase 412 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05971 Trre-Chr1 64074482 64076836 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05971 19 639 Receptor kinase-like Gene Family AT1G66910 38.240 3.19e-138 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g05971 Pkinase 6.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05971 - - mtr:11418569 1038.87