Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05970 ATGCTGCTACTTGTGTTGGTGGGTGGAGATGAGAATAATTATCAAGGAGGAGAGTGTCCAGCTTCATTTAGTTGTGGATATCTAGGCAATATCAGTTTCCCTTTCACTACAACTGAACGCCCGGACTGTGGTTTATTGCCAATACCCAATTGTGGTGATGATCCTCTGAAGCCCAAAATGATCCAATTTAAGAATAAAGGGAAACAATTTGAGTTTGAGGTTGCAATTGTAAGTCCTCTTGAGTTTCGCAGTGGTAATGCTACTTGTACTTTTGTTTTTAGAGACAATAAACTCTACAAACTGCTGCAAAACAGAAGTTGTGATGCTTTCAGATATAATTATACTCTCCCTCCCACCACCCACTTTGTTTCTTTTCATATAGAATTTCATGCAACCTTGTTCATGTGCAACCGTGCTCTCCATGTAAAGCCTCCATCATATATGCATAACTATACAAAGTGTCCTCTGAACGATCTCTACTACCAGCCTTACCACTATGCTGATAATGCATCTCAGACTGCTTTTACAGCTTGTACAAATGTCCACCTTCCGGCTAAAGACTTTGCTGACTCTGACAACCCTTTTGCTTTTGTTACTTCTGATATCCCAATTCAAGTAAGCATAACAAAGGAATGTGCATATTGTCACTACAACCAAAGTGGACGGTGCAAGGTTGATAGCAACGGGAGGTTTTATTGTGCCAATGTCACAGTTAGCAAGAATAAAGGTCTGAGCCGGAATGTCAAACTGGGTGTAGCAGCCATGGTGGCTATTGGAGTTGCTGTGCTGATATTATTGGCTTGCTGCGTTAGGAAAAATATCTTGCCTCCCACTTTTCTTTTGTTCAGGAAGGAAAATCCAGCCCGTCAAATTTTTGAGCAATATTTGAAAGAACATGGACCTCTTCCTGCTGCTGCTAGGTACAGTTATTCAGATATCAAGAAAATAACAAACTTTTTCAAAAACAAATTAGGCCAGGGAGGGTATGGAAGTGTATACAAAGGGAAATTACATGATGAGCGTGTTGTTGCAGTGAAGGTTTTGAGTGAATCAAAAGGTGATGGTGAAGATTTCATTAATGAAGTTGCGAGTATCAGTAGAACTTCGCATGTCAACGTTGTTAGACTTTTGGGGTTCTGTTTGGATGGTTCTAAAAAGGCACTCATATATGAATACATGCCAAATGGATCTCTTGAGAAGTTCATATATGAAGAGAAATATCCAATAAAAGATGATCCCCAATTAGATTGCAAAACATTGTTTGATATTGCAGTTGGTGTTGCTCGAGGATTAGAGTACTTGCACAGAGGCTGCAACACTAGAATTTTGCATTTTGACATAAAACCACATAATATATTACTAGATGATGATTTTTGTCCTAAAATTTCAGATTTTGGACTTGCTAAAATATGTCCAAGAAAAGAAAGCATTGTATCCATATTTGGCGCGAGGGGAACACCAGGATATATTGCTCCAGAATTGTTCTCCCGAAATTTTGGCGGGGTGTCACATAAATCAGATGTATACAGTTATGGAATGATGGTTTTAGAAATGGTTGGTCGAAGAAAGAACATCAAAGTTGAAGTGGATTGTTCTAGCGAGTTATATTTTCCACATTGGATTTATAAACGTCTTGAATTGAATCAGGATCTTGGACTCAAGTGTATTAAAAATGAAATTGATGAAGAAATGGTAAGAAAAATGACAGTGGTGAGTTTATGGTGCATACAAACTGACCCTACGCATCGACCAGCAATGCATAAAGTGGTGGAAATGCTGGAAGGGAGTCTTCAAGTCCTGGAAATACCACCCAAGCCATTTCTGTCTTCTCCTTCAACATCTTCAATCCATTTATCATCTGAAATATTATAA 1872 0.3868 MLLLVLVGGDENNYQGGECPASFSCGYLGNISFPFTTTERPDCGLLPIPNCGDDPLKPKMIQFKNKGKQFEFEVAIVSPLEFRSGNATCTFVFRDNKLYKLLQNRSCDAFRYNYTLPPTTHFVSFHIEFHATLFMCNRALHVKPPSYMHNYTKCPLNDLYYQPYHYADNASQTAFTACTNVHLPAKDFADSDNPFAFVTSDIPIQVSITKECAYCHYNQSGRCKVDSNGRFYCANVTVSKNKGLSRNVKLGVAAMVAIGVAVLILLACCVRKNILPPTFLLFRKENPARQIFEQYLKEHGPLPAAARYSYSDIKKITNFFKNKLGQGGYGSVYKGKLHDERVVAVKVLSESKGDGEDFINEVASISRTSHVNVVRLLGFCLDGSKKALIYEYMPNGSLEKFIYEEKYPIKDDPQLDCKTLFDIAVGVARGLEYLHRGCNTRILHFDIKPHNILLDDDFCPKISDFGLAKICPRKESIVSIFGARGTPGYIAPELFSRNFGGVSHKSDVYSYGMMVLEMVGRRKNIKVEVDCSSELYFPHWIYKRLELNQDLGLKCIKNEIDEEMVRKMTVVSLWCIQTDPTHRPAMHKVVEMLEGSLQVLEIPPKPFLSSPSTSSIHLSSEIL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05970 623 Gene3D Transferase(Phosphotransferase) domain 1 393 607 - -
Trre1g05970 623 SMART serkin_6 318 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05970 623 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Trre1g05970 623 Gene3D Phosphorylase Kinase; domain 1 293 392 - -
Trre1g05970 623 FunFam PR5-like receptor kinase 393 605 - -
Trre1g05970 623 FunFam serine/threonine-protein kinase PBS1-like 290 392 - -
Trre1g05970 623 ProSiteProfiles Protein kinase domain profile. 318 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05970 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Trre1g05970 623 Pfam Protein kinase domain 321 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05970 623 SUPERFAMILY Protein kinase-like (PK-like) 303 594 IPR011009 -
Trre1g05970 623 PANTHER RUST RESISTANCE KINASE LR10-RELATED 295 612 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05970 Trre-Chr1 64070755 64072930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05970 19 623 Receptor kinase-like Gene Family AT5G38260 40.419 1.74e-128 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre1g05970 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05970 - - tpra:123901115 969.533