Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g05967 ATGGCTTTGCTTCATGTAGTACATCATAGATTCTTTTTGTTCTTTTATTTAACTGTGTTACTGCTACTTGTCTTAACTAGTAAAGGAAATGGACACCATAATTGTCCAGACTCATTTGATTGTGGATATCTTGGGTCTATTCGCTACCCTTTTACCACGGTTGGATTCCCAAACTGTGGTGCATTGGCAATTCAAGGTTGTGATGATACCAACAAAACTGCAACCAAGACCATCCAGTTAACCAATGGAGGAACACACTTTCAAGTTACAAACATTGGTAATAATAACTGGCGGTCCAAAGACAGAATTTCCATTATTGACCAGAATTTCACCAAACTTTTGCAGAAAAGTGCTTGTGATGCTTTCAGTTATGATAATATTACGCTACCTCCTTCATCTCCTTTTGGTTTATTTTATATGAAAGAGAATATAACCGTTATCAAATGCAACCGTACCAAACAATTATTCCCTCCATATAATTTCTTCAAAAATAGTTCTTGTCCTCACTATGATTTTTACTTTGGTGATTCAATATCTGAAGACAAATCCAACAACTCTTTTGCATCATGTTCGTTGTTTCATCTTCCCGTCATTAAAACAGGCTTTGCACTTTCAGGCAACCCGTTTAAATATTTAGCTGAAGAAATTACCTTTAAGTTCCAACCTTCAGATGACTGTCAACGGTGTTATAACCGTGATAAAAATAGCCATTGTCTTCTTGACAGCAATGGACATATTTATTGCCCAGCAAGGAAGGGTAGAAGTTTGACGTGGAAGCTAGGATTGATTTTAGGAGTTGGTGTTGGACCATGGATCATAGTTGGACTGTTCCTCGCGTTAAGGCACTACAAACGGAAATATGGCCCTGCACGCATCCAATTCCAACCAAGCAACTATGTTGATCCTTATCCAAATCGGGAAATGGAGTCAAACAAGCTCTTCTTTGGGGTACCTGTATTCTCTTATGAAGAGCTTCAACAAGCAACAAATAACTTCGACCGCACTAGAAAGCTAGGAGATGGAGGTTTTGGCACTGTTTACTATGGAAAACTCAAAGATGGAAGGGAGGTTGCTGTGAAACACTTGTTTGAGCACAATTACAGGAGAGTAGAACAGTTTGTGAATGAAATTGAAATACTGTCTCGTTTGCGCCACAGGAATCTAATGTCCCTCTATGGTTGCACTTCACGTTACAGCCGCGAGTTACTGCTTGTATATGAATACATTCCAAATGGAACTGTCGCTAGCCATCTCCATGGTGATTTAGCTAGAGCTGGTTTGCTGACATGGCCTATTCGAATGCAAATCGCAATAGAAACTGCTTCTGCATTGGCTTATCTACATGCTTCCGATATCATTCACCGTGATGTCAAAACCAACAACATTCTACTTGACATTAATTTTTCTGTTAAGGTAGCAGATTTTGGACTTTCGAGGTTGTTCCCCAATGATGCCAGCCATGTCTCGACAACTCCACAAGGAAGTCCAGGTTATCTAGATCCTGAATATTTCCAACTCTACAAGCTCTCAGTGAAGAGTGATGTGTATAGTTTTGGTGTTGTTCTTCTTGAACTAATATCATCTAGGACAGCAATTGATGCTGCCAGAGAAGGAGAGGAAATTAACTTAGCAAATTTAGCAGCTAAGAAGATAAGAAACGACGAAGTTAGAGAGCTGGTTGACCCATCGCTTGGTTTTGAATCAGACAGTGAAGTTAAAAGGATGGTAAATTCAGTGGCAGAATTGGCATTTCAATGTGTGTTAGGAGACATGGAATTAAGACCTTCTATGGACGAAGTTCTGCAAGAACTCAAGAAAATTGATGGTGGGAATTTTGAGTTTGATCATCTAGAAAAAGTACATCACTATGCTGGCTCCTCGCGCTCTAAAGAAGTACATCTACCAATAGTTGGAACTTCTATCGATAAGAAGCAAGAATCATCCTCTTCACCAAAGTCATTGACTGAGAAATGGGAAAGTAAATCTAATACGCCTAGTTCCGGTGGTTAA 2010 0.394 MALLHVVHHRFFLFFYLTVLLLLVLTSKGNGHHNCPDSFDCGYLGSIRYPFTTVGFPNCGALAIQGCDDTNKTATKTIQLTNGGTHFQVTNIGNNNWRSKDRISIIDQNFTKLLQKSACDAFSYDNITLPPSSPFGLFYMKENITVIKCNRTKQLFPPYNFFKNSSCPHYDFYFGDSISEDKSNNSFASCSLFHLPVIKTGFALSGNPFKYLAEEITFKFQPSDDCQRCYNRDKNSHCLLDSNGHIYCPARKGRSLTWKLGLILGVGVGPWIIVGLFLALRHYKRKYGPARIQFQPSNYVDPYPNREMESNKLFFGVPVFSYEELQQATNNFDRTRKLGDGGFGTVYYGKLKDGREVAVKHLFEHNYRRVEQFVNEIEILSRLRHRNLMSLYGCTSRYSRELLLVYEYIPNGTVASHLHGDLARAGLLTWPIRMQIAIETASALAYLHASDIIHRDVKTNNILLDINFSVKVADFGLSRLFPNDASHVSTTPQGSPGYLDPEYFQLYKLSVKSDVYSFGVVLLELISSRTAIDAAREGEEINLANLAAKKIRNDEVRELVDPSLGFESDSEVKRMVNSVAELAFQCVLGDMELRPSMDEVLQELKKIDGGNFEFDHLEKVHHYAGSSRSKEVHLPIVGTSIDKKQESSSSPKSLTEKWESKSNTPSSGG 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g05967 669 FunFam Wall-associated receptor kinase-like 20 409 616 - -
Trre1g05967 669 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Trre1g05967 669 SMART serkin_6 332 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05967 669 Gene3D Transferase(Phosphotransferase) domain 1 409 612 - -
Trre1g05967 669 FunFam receptor-like protein kinase FERONIA 301 408 - -
Trre1g05967 669 SUPERFAMILY Protein kinase-like (PK-like) 311 604 IPR011009 -
Trre1g05967 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Trre1g05967 669 MobiDBLite consensus disorder prediction 641 669 - -
Trre1g05967 669 Gene3D Phosphorylase Kinase; domain 1 304 408 - -
Trre1g05967 669 ProSiteProfiles Protein kinase domain profile. 332 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g05967 669 Pfam Protein tyrosine and serine/threonine kinase 335 604 IPR001245 GO:0004672|GO:0006468
Trre1g05967 669 MobiDBLite consensus disorder prediction 637 669 - -
Trre1g05967 669 CDD STKc_IRAK 338 607 - -
Trre1g05967 669 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 12 663 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g05967 Trre-Chr1 64043901 64046605 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g05967 35 669 Receptor kinase-like Gene Family AT1G25390 42.923 1.12e-151 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre1g05967 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g05967 - - gmx:100778085 776.548